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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 180ChIP-seq
  • 23DNase-seq
  • 3ATAC-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 1total RNA-seq
Assay category
  • 180DNA binding
  • 26DNA accessibility
  • 4Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 150histone
  • 150histone modification
  • 84narrow histone mark
  • 66broad histone mark
  • 30control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 91November, 2017
  • 54October, 2019
  • 28May, 2019
  • 21June, 2019
  • 10October, 2017
  • 9July, 2019
  • 2November, 2018
Available data
  • 194bam
  • 173bigWig
  • 162bed narrowPeak
  • 117bigBed narrowPeak
  • 81tagAlign
  • 38bed broadPeak
  • 29bigBed broadPeak
  • 26bed bed3+
  • 21fastq
  • 4tsv
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
Organism
  • 215Homo sapiens
Biosample type
  • 194tissue
  • 21primary cell
Organ
  • 808pancreas
  • 775liver
  • 627connective tissue
  • 474adipose tissue
  • 443epithelium
  • 368heart
  • 335kidney
  • 229vasculature
  • 223blood vessel
  • 215brain
  • 151bone element
  • 137artery
  • 119limb
  • 87musculature of body
  • 67blood
  • 67bodily fluid
  • 58eye
  • 42nerve
  • 35embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 215AMP
Genome assembly (visualization)
  • 168GRCh38
  • 117hg19
Lab
  • 215AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 4missing controlled_by
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

215 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
total RNA-seq
tissue
brain141211
layer of hippocampus22
caudate nucleus151
substantia nigra15
temporal lobe15
primary cell
astrocyte of the cerebellum311
brain microvascular endothelial cell311
choroid plexus epithelial cell311
brain pericyte11
cerebellar granule cell2
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