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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
23
DNase-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
total RNA-seq
Assay category
180
DNA binding
26
DNA accessibility
4
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
150
histone
150
histone modification
84
narrow histone mark
66
broad histone mark
30
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
54
October, 2019
28
May, 2019
21
June, 2019
10
October, 2017
9
July, 2019
2
November, 2018
Available data
194
bam
173
bigWig
162
bed narrowPeak
117
bigBed narrowPeak
81
tagAlign
38
bed broadPeak
29
bigBed broadPeak
26
bed bed3+
21
fastq
4
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
215
Homo sapiens
Biosample type
194
tissue
21
primary cell
Organ
808
pancreas
775
liver
627
connective tissue
474
adipose tissue
443
epithelium
368
heart
335
kidney
229
vasculature
223
blood vessel
215
brain
151
bone element
137
artery
119
limb
87
musculature of body
67
blood
67
bodily fluid
58
eye
42
nerve
35
embryo
24
spleen
21
vein
19
lung
18
ureter
8
skeleton
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
215
AMP
Genome assembly (visualization)
168
GRCh38
117
hg19
Lab
215
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
replication_type!
anisogenic
BIOSAMPLE
ASSAY
215 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
total RNA-seq
tissue
brain
14
12
1
1
layer of hippocampus
22
caudate nucleus
15
1
substantia nigra
15
temporal lobe
15
+ See 50 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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