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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 207ChIP-seq
  • 27DNase-seq
  • 16total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 207DNA binding
  • 32DNA accessibility
  • 20Transcription
Target of assay
  • 179histone
  • 179histone modification
  • 112narrow histone mark
  • 67broad histone mark
  • 28control
Date released
  • 85November, 2017
  • 80October, 2019
  • 28May, 2019
  • 25June, 2019
  • 16October, 2017
  • 12February, 2020
  • 10July, 2019
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 223bam
  • 199bigWig
  • 187bed narrowPeak
  • 118tagAlign
  • 116bigBed narrowPeak
  • 36bed broadPeak
  • 27bed bed3+
  • 27bigBed broadPeak
  • 22tsv
  • 15fastq
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 261Homo sapiens
Biosample type
  • 257tissue
  • 4primary cell
Organ
  • 883pancreas
  • 673connective tissue
  • 491adipose tissue
  • 436epithelium
  • 381liver
  • 377heart
  • 315kidney
  • 261brain
  • 194vasculature
  • 193blood vessel
  • 158bone element
  • 134artery
  • 117limb
  • 83musculature of body
  • 57eye
  • 43nerve
  • 26embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13blood
  • 13bodily fluid
  • 5gonad
  • 5ovary
  • 4vein
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 261AMP
Genome assembly (visualization)
  • 197GRCh38
  • 140hg19
Lab
  • 261AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

261 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
tissue
brain15141
layer of hippocampus23
caudate nucleus1511
substantia nigra161
temporal lobe1511
primary cell
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
choroid plexus epithelial cell1
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