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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
27
DNase-seq
16
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
207
DNA binding
32
DNA accessibility
20
Transcription
Target of assay
179
histone
179
histone modification
112
narrow histone mark
67
broad histone mark
28
control
Date released
85
November, 2017
80
October, 2019
28
May, 2019
25
June, 2019
16
October, 2017
12
February, 2020
10
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
223
bam
199
bigWig
187
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
22
tsv
15
fastq
1
bed bed3
1
tagAlign bed3+
Organism
261
Homo sapiens
Biosample type
257
tissue
4
primary cell
Organ
883
pancreas
673
connective tissue
491
adipose tissue
436
epithelium
381
liver
377
heart
315
kidney
261
brain
194
vasculature
193
blood vessel
158
bone element
134
artery
117
limb
83
musculature of body
57
eye
43
nerve
26
embryo
25
spleen
20
lung
18
ureter
16
skeleton
13
blood
13
bodily fluid
5
gonad
5
ovary
4
vein
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
261
AMP
Genome assembly (visualization)
197
GRCh38
140
hg19
Lab
261
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
replication_type!
isogenic
BIOSAMPLE
ASSAY
261 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
15
14
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
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