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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 49ChIP-seq
  • 17total RNA-seq
  • 14DNase-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1ATAC-seq
  • 1FAIRE-seq
Assay category
  • 49DNA binding
  • 24Transcription
  • 16DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 45histone
  • 45histone modification
  • 38narrow histone mark
  • 7broad histone mark
  • 4control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 38October, 2019
  • 17July, 2019
  • 14June, 2019
  • 12February, 2020
  • 6November, 2017
  • 6October, 2017
  • 2March, 2020
  • 1February, 2023
Available data
  • 72bigWig
  • 69bam
  • 57bed narrowPeak
  • 37tagAlign
  • 26tsv
  • 21bigBed narrowPeak
  • 20bed broadPeak
  • 20bigBed broadPeak
  • 17bed bed3+
  • 6fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 96Homo sapiens
Biosample type
  • 79tissue
  • 17primary cell
Organ
  • 426liver
  • 201pancreas
  • 169epithelium
  • 96brain
  • 68connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 96AMP
Genome assembly (visualization)
  • 71hg19
  • 69GRCh38
Lab
  • 96AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

96 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
ATAC-seq
FAIRE-seq
tissue
brain111211
frontal cortex2211
cerebellum (Hemisphere)1111
Ammon's horn11
angular gyrus2
primary cell
astrocyte of the cerebellum211
brain microvascular endothelial cell211
choroid plexus epithelial cell211
cerebellar granule cell2
Purkinje cell1
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