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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
17
total RNA-seq
14
DNase-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
49
DNA binding
24
Transcription
16
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
45
histone
45
histone modification
38
narrow histone mark
7
broad histone mark
4
control
3
RNA binding protein
3
transcription factor
Date released
38
October, 2019
17
July, 2019
14
June, 2019
12
February, 2020
6
November, 2017
6
October, 2017
2
March, 2020
1
February, 2023
Available data
72
bigWig
69
bam
57
bed narrowPeak
37
tagAlign
26
tsv
21
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
17
bed bed3+
6
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
96
Homo sapiens
Biosample type
79
tissue
17
primary cell
Organ
426
liver
201
pancreas
169
epithelium
96
brain
68
connective tissue
58
blood
58
bodily fluid
58
kidney
49
vasculature
44
blood vessel
41
heart
22
musculature of body
19
vein
17
adipose tissue
13
embryo
11
artery
9
bone element
8
limb
8
skeleton
7
eye
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
96
AMP
Genome assembly (visualization)
71
hg19
69
GRCh38
Lab
96
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
replication_type!
unreplicated
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
ATAC-seq
FAIRE-seq
tissue
brain
11
1
2
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
angular gyrus
2
+ See 42 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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