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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 11ChIP-seq
  • 5DNase-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 1total RNA-seq
Assay category
  • 11DNA binding
  • 5DNA accessibility
  • 4Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 8histone
  • 8histone modification
  • 5narrow histone mark
  • 3RNA binding protein
  • 3broad histone mark
  • 3control
  • 3transcription factor
Date released
  • 8July, 2019
  • 6November, 2017
  • 6October, 2019
  • 5June, 2019
Available data
  • 23bigWig
  • 20bam
  • 16bed narrowPeak
  • 11bed broadPeak
  • 11bigBed broadPeak
  • 11bigBed narrowPeak
  • 8bed bed3+
  • 6fastq
  • 4tsv
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
Organism
  • 25Homo sapiens
Biosample type
  • 17primary cell
  • 8tissue
Organ
  • 410liver
  • 88epithelium
  • 63pancreas
  • 56blood
  • 56bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11connective tissue
  • 11embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 25AMP
Genome assembly (visualization)
  • 24hg19
  • 20GRCh38
Lab
  • 25AMP-T2D consortium
BIOSAMPLE
ASSAY

25 results

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Clear Filters
ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
RRBS
total RNA-seq
primary cell
astrocyte of the cerebellum211
brain microvascular endothelial cell211
choroid plexus epithelial cell211
cerebellar granule cell2
Purkinje cell1
tissue
brain511
middle frontal gyrus1
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