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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 148ChIP-seq
  • 32DNase-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 148DNA binding
  • 37DNA accessibility
  • 24Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 187histone
  • 187histone modification
  • 117narrow histone mark
  • broad histone mark
  • 31control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 83October, 2019
  • 49November, 2017
  • 30June, 2019
  • 18July, 2019
  • 13May, 2019
  • 12February, 2020
  • 6October, 2017
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 182bam
  • 162bigWig
  • 142bed narrowPeak
  • 73tagAlign
  • 69bigBed narrowPeak
  • 43bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • 15fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 216Homo sapiens
Biosample type
  • 195tissue
  • 21primary cell
Organ
  • 868pancreas
  • 749liver
  • 640connective tissue
  • 480epithelium
  • 471adipose tissue
  • 339kidney
  • 336heart
  • 216brain
  • 191vasculature
  • 185blood vessel
  • 159bone element
  • 127artery
  • 88limb
  • 76musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 33embryo
  • 27nerve
  • 21spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 216AMP
Genome assembly (visualization)
  • 156GRCh38
  • 139hg19
Lab
  • 216AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 1missing controlled_by
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

216 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain714111
layer of hippocampus11
caudate nucleus711
substantia nigra81
temporal lobe711
primary cell
astrocyte of the cerebellum311
brain microvascular endothelial cell311
choroid plexus epithelial cell311
brain pericyte11
cerebellar granule cell2
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