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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190ChIP-seq
  • 32DNase-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 190DNA binding
  • 37DNA accessibility
  • 21Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 187histone
  • 187histone modification
  • 117narrow histone mark
  • 70broad histone mark
  • control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 79October, 2019
  • 76November, 2017
  • 30June, 2019
  • 25May, 2019
  • 15July, 2019
  • 13October, 2017
  • 12February, 2020
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 216bigWig
  • 213bam
  • 203bed narrowPeak
  • 127bigBed narrowPeak
  • 99tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 23tsv
  • 16fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 255Homo sapiens
Biosample type
  • 240tissue
  • 15primary cell
Organ
  • 893pancreas
  • 683liver
  • 649connective tissue
  • 494epithelium
  • 467adipose tissue
  • 373heart
  • 342kidney
  • 255brain
  • 214vasculature
  • 209blood vessel
  • 159bone element
  • 132artery
  • 105limb
  • 90musculature of body
  • 63blood
  • 63bodily fluid
  • 60eye
  • 32nerve
  • 30embryo
  • 20lung
  • 20vein
  • 18ureter
  • 17spleen
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 255AMP
Genome assembly (visualization)
  • 214GRCh38
  • 158hg19
Lab
  • 255AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

255 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain1714111
layer of hippocampus20
caudate nucleus1311
substantia nigra141
temporal lobe1311
primary cell
astrocyte of the cerebellum211
brain microvascular endothelial cell211
choroid plexus epithelial cell211
brain pericyte11
astrocyte of the hippocampus1
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