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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 32DNase-seq
  • 31ChIP-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 37DNA accessibility
  • 31DNA binding
  • 24Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 187histone
  • histone modification
  • 117narrow histone mark
  • 70broad histone mark
  • 31control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 30June, 2019
  • 18July, 2019
  • 18November, 2017
  • 12February, 2020
  • 9October, 2019
  • 4October, 2017
  • 3May, 2019
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 77bam
  • 56bigWig
  • 36bed narrowPeak
  • 36bigBed narrowPeak
  • 35bed bed3+
  • 35bed broadPeak
  • 35bigBed broadPeak
  • 26tsv
  • 19tagAlign
  • 11fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
Organism
  • 99Homo sapiens
Biosample type
  • 81tissue
  • 18primary cell
Organ
  • 795pancreas
  • 688liver
  • 606connective tissue
  • 459adipose tissue
  • 431epithelium
  • 324kidney
  • 296heart
  • 165vasculature
  • 160blood vessel
  • 159bone element
  • 121artery
  • 99brain
  • 73limb
  • 68blood
  • 68bodily fluid
  • 63musculature of body
  • 58eye
  • 25embryo
  • 20lung
  • 19nerve
  • 19spleen
  • 18ureter
  • 16skeleton
  • 7vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 99AMP
Genome assembly (visualization)
  • 49GRCh38
  • 47hg19
Lab
  • 99AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

99 results

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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain143111
cerebellum (Hemisphere)12111
frontal cortex2211
caudate nucleus121
temporal lobe211
primary cell
astrocyte of the cerebellum121
brain microvascular endothelial cell121
choroid plexus epithelial cell121
brain pericyte11
cerebellar granule cell2
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