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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 101ChIP-seq
  • 32DNase-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 101DNA binding
  • 37DNA accessibility
  • 24Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 187histone
  • 187histone modification
  • narrow histone mark
  • 70broad histone mark
  • 31control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 60November, 2017
  • 30June, 2019
  • 18July, 2019
  • 18May, 2019
  • 14October, 2017
  • 12February, 2020
  • 12October, 2019
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 138bam
  • 116bigWig
  • 97bed narrowPeak
  • 94bigBed narrowPeak
  • 64tagAlign
  • 39bed broadPeak
  • 35bed bed3+
  • 35bigBed broadPeak
  • 26tsv
  • 17fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
Organism
  • 169Homo sapiens
Biosample type
  • 151tissue
  • 18primary cell
Organ
  • 873pancreas
  • 731liver
  • 651connective tissue
  • 479adipose tissue
  • 428epithelium
  • 353heart
  • 339kidney
  • 210vasculature
  • 205blood vessel
  • 169brain
  • 159bone element
  • 135artery
  • 107limb
  • 84musculature of body
  • 68blood
  • 68bodily fluid
  • 58eye
  • 35nerve
  • 29embryo
  • 23spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 16vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 169AMP
Genome assembly (visualization)
  • 110GRCh38
  • 72hg19
Lab
  • 169AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 3missing controlled_by
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

169 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain1614111
layer of hippocampus15
caudate nucleus1011
temporal lobe1011
substantia nigra101
cingulate gyrus9
middle frontal area 469
angular gyrus8
cerebellum (Hemisphere)21111
frontal cortex2211
Ammon's horn111
putamen111
cerebellum2
diencephalon11
amygdala1
anterior cingulate cortex1
central medial thalamic nucleus1
cerebellar cortex1
dorsolateral prefrontal cortex1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))1
globus pallidus1
hypothalamus1
inferior parietal cortex1
islet of Langerhans1
medial globus pallidus1
medulla oblongata1
midbrain1
middle frontal gyrus1
nucleus accumbens1
occipital pole1
pons1
posterior cingulate cortex1
primary motor cortex1
secondary auditory cortex1
primary cell
astrocyte of the cerebellum211
brain microvascular endothelial cell211
choroid plexus epithelial cell211
brain pericyte11
cerebellar granule cell2
Purkinje cell1
astrocyte of the hippocampus1
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