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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 80ChIP-seq
  • 76total RNA-seq
  • 19ATAC-seq
  • 7DNase-seq
  • 4single cell RNA-seq
  • 3pCHi-C
  • 2Capture-C
  • 1Hi-C
  • 1RRBS
Assay category
  • 80DNA binding
  • 80Transcription
  • 26DNA accessibility
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 46histone
  • 46histone modification
  • 24broad histone mark
  • 23transcription factor
  • 21narrow histone mark
  • 11control
  • 5RNA binding protein
  • 2chromatin remodeller
Date released
  • 69February, 2021
  • 68August, 2017
  • 17June, 2019
  • 13February, 2023
  • 6July, 2019
  • 6November, 2020
  • 4August, 2021
  • 3October, 2019
  • 2April, 2018
  • 2July, 2018
  • 2May, 2021
  • 1March, 2020
Available data
  • 151bam
  • 145bigWig
  • 77tsv
  • 62bed narrowPeak
  • 57fastq
  • 21bed bed3+
  • 18bigBed narrowPeak
  • 14tagAlign
  • 7bed broadPeak
  • 7bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
Organism
  • 193Homo sapiens
Biosample type
  • 96in vitro differentiated cells
  • 59tissue
  • 37primary cell
  • 1stem cell
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • 524epithelium
  • adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 192AMP
  • 1T1D
Genome assembly (visualization)
  • 163hg19
  • 142GRCh38
Lab
  • 188AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 18inconsistent ontology term
Audit category:
  • 5missing controlled_by
Audit category:
  • 6inconsistent control read length
organ_slims!
  • adipose tissue
BIOSAMPLE
ASSAY

193 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
Capture-C
Hi-C
RRBS
in vitro differentiated cells
adipocyte675811
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
tissue
bone tissue58
islet of Langerhans1
primary cell
cardiac fibroblast531
osteoblast5211
mesenchymal stem cell7
pancreatic stellate cell4
brain pericyte11
stem cell
mesenchymal stem cell1
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