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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 471total RNA-seq
  • 148ChIP-seq
  • 25ATAC-seq
  • 6DNase-seq
  • 6WGBS
  • 5pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
Assay category
  • 478Transcription
  • 148DNA binding
  • 31DNA accessibility
  • 6DNA methylation
  • 13D chromatin structure
Target of assay
  • 76histone
  • 76histone modification
  • 44broad histone mark
  • 39transcription factor
  • 33control
  • 31narrow histone mark
  • 9RNA binding protein
  • 2chromatin remodeller
Date released
  • 455February, 2021
  • 125August, 2017
  • 23October, 2018
  • 15July, 2019
  • 14February, 2023
  • 10June, 2019
  • 6November, 2020
  • 5August, 2021
  • 4October, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 1August, 2018
  • 1January, 2018
  • 1May, 2021
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 582bam
  • 561bigWig
  • 475tsv
  • 101fastq
  • 69bed narrowPeak
  • 24bed bed3+
  • 22bigBed narrowPeak
  • 22tagAlign
  • 7bed broadPeak
  • 6bed bed3
  • 6bigBed broadPeak
  • 4bed bedgraph
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 671Homo sapiens
Biosample type
  • 547tissue
  • 96in vitro differentiated cells
  • 28primary cell
  • 1stem cell
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • 524epithelium
  • 491adipose tissue
  • heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 671AMP
  • 1T1D
Genome assembly (visualization)
  • 580hg19
  • 557GRCh38
Lab
  • 667AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 13inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
organ_slims!
  • heart
BIOSAMPLE
ASSAY

672 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
tissue
adipose tissue3822331
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue712111
omental fat pad511121
in vitro differentiated cells
adipocyte567811
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
osteoblast5211
mesenchymal stem cell7
pancreatic stellate cell4
brain pericyte11
mesenchymal stem cell of adipose11
stem cell
mesenchymal stem cell1
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