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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
Assay category
86
DNA binding
Target of assay
376
transcription factor
166
histone modification
165
histone
141
control
86
narrow histone mark
82
recombinant protein
78
broad histone mark
66
RNA binding protein
24
chromatin remodeller
2
other context
2
other post-translational modification
Date released
41
August, 2017
27
May, 2020
7
November, 2017
4
June, 2019
3
October, 2019
2
August, 2021
2
December, 2017
Available data
63
bigWig
62
bed narrowPeak
60
bam
45
tagAlign
27
fastq
14
bigBed narrowPeak
7
bed broadPeak
6
bigBed broadPeak
Organism
86
Homo sapiens
Biosample type
57
tissue
16
in vitro differentiated cells
9
cell line
4
primary cell
Organ
117
brain
73
pancreas
60
liver
epithelium
40
heart
33
connective tissue
26
vasculature
25
blood vessel
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
embryo
8
nerve
6
artery
6
vein
4
gonad
4
ovary
3
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
86
AMP
Genome assembly (visualization)
63
hg19
51
GRCh38
Lab
84
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
epithelium
thymus
BIOSAMPLE
ASSAY
86 results
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Clear Filters
ChIP-seq
tissue
liver
42
subcutaneous abdominal adipose tissue
11
right lobe of liver
2
adipose tissue
1
islet of Langerhans
1
in vitro differentiated cells
adipocyte
16
cell line
HepG2
9
primary cell
cardiac fibroblast
2
mesenchymal stem cell
2
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