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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 153ChIP-seq
  • 25ATAC-seq
  • 9DNase-seq
  • 6WGBS
  • 6total RNA-seq
  • 5pCHi-C
  • 2Capture-C
  • 1Hi-C
  • 1RRBS
Assay category
  • 153DNA binding
  • 34DNA accessibility
  • 7DNA methylation
  • 6Transcription
  • 13D chromatin structure
Target of assay
  • 78histone
  • 78histone modification
  • 44broad histone mark
  • 40transcription factor
  • 35control
  • 33narrow histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 125August, 2017
  • 23October, 2018
  • 18June, 2019
  • 10February, 2023
  • 7February, 2021
  • 7July, 2019
  • 4August, 2021
  • 4October, 2019
  • 2March, 2020
  • 2November, 2020
  • 1August, 2018
  • 1January, 2018
  • 1May, 2021
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 125bam
  • 102bigWig
  • 98fastq
  • 75bed narrowPeak
  • 28bigBed narrowPeak
  • 27bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 8tsv
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 208Homo sapiens
Biosample type
  • 89tissue
  • 88in vitro differentiated cells
  • 30primary cell
  • 1stem cell
Organ
  • 601liver
  • 449pancreas
  • 320epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 208connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 90adipose tissue
  • 88musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 207AMP
  • 1T1D
Genome assembly (visualization)
  • 120hg19
  • 97GRCh38
Lab
  • 203AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 17inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

208 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
total RNA-seq
pCHi-C
Capture-C
Hi-C
RRBS
tissue
subcutaneous abdominal adipose tissue363
omental fat pad1112
subcutaneous adipose tissue121
white adipose tissue12
adipose tissue2331
in vitro differentiated cells
adipocyte67811
chondrocyte5
immature adipocyte2
osteoblast11
preadipocyte1
primary cell
cardiac fibroblast531
mesenchymal stem cell7
osteoblast2111
brain pericyte11
adult endothelial progenitor cell1
stem cell
mesenchymal stem cell1
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