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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 457total RNA-seq
  • 135ChIP-seq
  • 14ATAC-seq
  • 8DNase-seq
  • 6WGBS
  • 2pCHi-C
  • 2small RNA-seq
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 459Transcription
  • 135DNA binding
  • 22DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Target of assay
  • 72histone
  • 72histone modification
  • 40broad histone mark
  • 33control
  • 31narrow histone mark
  • 30transcription factor
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 447February, 2021
  • 114August, 2017
  • 23October, 2018
  • 12July, 2019
  • 10June, 2019
  • 7February, 2023
  • 6November, 2020
  • 1August, 2018
  • 1August, 2021
  • 1January, 2018
  • 1May, 2021
  • 1May, 2023
  • 1November, 2018
  • 1October, 2017
  • 1October, 2019
Available data
  • 554bam
  • 530bigWig
  • 457tsv
  • 87fastq
  • 57bed narrowPeak
  • 22tagAlign
  • 18bigBed narrowPeak
  • 9bed bed3+
  • 9bed broadPeak
  • 8bigBed broadPeak
  • 5bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 626Homo sapiens
Biosample type
  • 532tissue
  • 77in vitro differentiated cells
  • 18primary cell
Organ
  • 808pancreas
  • 775liver
  • 627connective tissue
  • 474adipose tissue
  • 443epithelium
  • 368heart
  • 335kidney
  • 229vasculature
  • 223blood vessel
  • 215brain
  • 151bone element
  • 137artery
  • 119limb
  • 87musculature of body
  • 67blood
  • 67bodily fluid
  • 58eye
  • 42nerve
  • 35embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 626AMP
  • 1T1D
Genome assembly (visualization)
  • 541hg19
  • 529GRCh38
Lab
  • 626AMP-T2D consortium
  • 1Kyle Gaulton, UCSD
Audit category:
  • 8inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 2inconsistent control read length
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

627 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue382213
bone tissue58
subcutaneous abdominal adipose tissue363
omental fat pad411121
subcutaneous adipose tissue412111
in vitro differentiated cells
adipocyte46041
chondrocyte5
immature adipocyte11
white fat cell1
primary cell
cardiac fibroblast521
osteoblast411
brain pericyte11
adult endothelial progenitor cell1
hepatic stellate cell1
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