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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 152ChIP-seq
  • 21ATAC-seq
  • 6DNase-seq
  • 6WGBS
  • 4pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1RNA microarray
Assay category
  • 481Transcription
  • 152DNA binding
  • 27DNA accessibility
  • 6DNA methylation
Target of assay
  • 77histone
  • 77histone modification
  • 44broad histone mark
  • 40transcription factor
  • 35control
  • 32narrow histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 451February, 2021
  • 124August, 2017
  • 23October, 2018
  • 16July, 2019
  • 15June, 2019
  • 14February, 2023
  • 6November, 2020
  • 5August, 2021
  • 4October, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 1August, 2018
  • 1January, 2018
  • 1May, 2021
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 589bam
  • 565bigWig
  • 478tsv
  • 100fastq
  • 71bed narrowPeak
  • 24bed bed3+
  • 24bigBed narrowPeak
  • 22tagAlign
  • 7bed broadPeak
  • 6bed bed3
  • 6bigBed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bedpe bed3+
Organism
  • 672Homo sapiens
Biosample type
  • 547tissue
  • 92in vitro differentiated cells
  • 33primary cell
  • 1stem cell
Organ
  • 883pancreas
  • 673connective tissue
  • 491adipose tissue
  • 436epithelium
  • 381liver
  • 377heart
  • 315kidney
  • 261brain
  • 194vasculature
  • 193blood vessel
  • 158bone element
  • 134artery
  • 117limb
  • 83musculature of body
  • 57eye
  • 43nerve
  • 26embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13blood
  • 13bodily fluid
  • 5gonad
  • 5ovary
  • 4vein
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 673AMP
Genome assembly (visualization)
  • 579hg19
  • 562GRCh38
Lab
  • 669AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 16inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

673 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
RNA microarray
tissue
adipose tissue3822331
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue712111
omental fat pad511121
in vitro differentiated cells
adipocyte56741
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
osteoblast5211
mesenchymal stem cell7
cardiac fibroblast41
pancreatic stellate cell4
mesenchymal stem cell of adipose11
stem cell
mesenchymal stem cell1
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