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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 19ChIP-seq
  • 17total RNA-seq
  • 15ATAC-seq
  • 4DNase-seq
  • 4pCHi-C
  • 4single cell RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RRBS
  • 1small RNA-seq
Assay category
  • 22Transcription
  • 19DNA accessibility
  • 19DNA binding
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 10transcription factor
  • 7histone
  • 7histone modification
  • 4broad histone mark
  • 3narrow histone mark
  • 2control
Date released
  • 12August, 2017
  • 12February, 2021
  • 11June, 2019
  • 8July, 2019
  • 7February, 2023
  • 4August, 2021
  • 3October, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2May, 2021
  • 1November, 2019
Available data
  • 45bigWig
  • 43bam
  • 22bed narrowPeak
  • 21bed bed3+
  • 21tsv
  • 15fastq
  • 14bigBed narrowPeak
  • 4bed bedgraph
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
Organism
  • 68Homo sapiens
Biosample type
  • 27primary cell
  • 25in vitro differentiated cells
  • 15tissue
  • 1stem cell
Organ
  • 426liver
  • 201pancreas
  • 169epithelium
  • 96brain
  • 68connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 67AMP
  • 1T1D
Genome assembly (visualization)
  • 58hg19
  • 41GRCh38
Lab
  • 63AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 4missing controlled_by
Audit category:
  • 4inconsistent control read length
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

68 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
Hi-C
RRBS
small RNA-seq
primary cell
mesenchymal stem cell7
cardiac fibroblast131
pancreatic stellate cell4
osteoblast111
mesenchymal stem cell of adipose11
in vitro differentiated cells
adipocyte71811
immature adipocyte11
osteoblast11
preadipocyte11
cardiac fibroblast1
tissue
white adipose tissue4
adipose tissue21
subcutaneous adipose tissue3
visceral abdominal adipose tissue3
adipose tissue(adipose white tissue)1
stem cell
mesenchymal stem cell1
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