Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 18ChIP-seq
  • 17total RNA-seq
  • 11ATAC-seq
  • 4single cell RNA-seq
  • 3pCHi-C
  • 2Capture-C
  • 1DNase-seq
  • 1small RNA-seq
Assay category
  • 22Transcription
  • 18DNA binding
  • 12DNA accessibility
Target of assay
  • 10transcription factor
  • 6histone
  • 6histone modification
  • 4broad histone mark
  • 2control
  • 2narrow histone mark
Date released
  • 11August, 2017
  • 8February, 2021
  • 8June, 2019
  • 7February, 2023
  • 6July, 2019
  • 4August, 2021
  • 3October, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 1May, 2021
  • 1November, 2019
Available data
  • 40bigWig
  • 39bam
  • 21tsv
  • 18bed bed3+
  • 18bed narrowPeak
  • 14fastq
  • 10bigBed narrowPeak
  • 1bed bed3
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 57Homo sapiens
Biosample type
  • 21primary cell
  • 20in vitro differentiated cells
  • 15tissue
  • 1stem cell
Organ
  • 138pancreas
  • 81epithelium
  • 71brain
  • 57connective tissue
  • 25heart
  • 19kidney
  • 17adipose tissue
  • 16liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 57AMP
Genome assembly (visualization)
  • 48hg19
  • 37GRCh38
Lab
  • 53AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 11inconsistent ontology term
Audit category:
  • 4missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

57 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
Capture-C
DNase-seq
small RNA-seq
primary cell
mesenchymal stem cell7
pancreatic stellate cell4
osteoblast111
mesenchymal stem cell of adipose11
cardiac atrium fibroblast1
in vitro differentiated cells
adipocyte7141
immature adipocyte11
osteoblast11
preadipocyte11
cardiac fibroblast1
tissue
white adipose tissue4
adipose tissue21
subcutaneous adipose tissue3
visceral abdominal adipose tissue3
adipose tissue(adipose white tissue)1
stem cell
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego