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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 4ATAC-seq
  • 3DNase-seq
  • 1ChIP-seq
  • 1Hi-C
  • 1RRBS
  • 1pCHi-C
Assay category
  • 7DNA accessibility
  • 13D chromatin structure
  • 1DNA binding
  • 1DNA methylation
Target of assay
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 4February, 2021
  • 3June, 2019
  • 2July, 2019
  • 1August, 2017
  • 1May, 2021
Available data
  • 5bigWig
  • 4bam
  • 4bed bedgraph
  • 4bed narrowPeak
  • 4bigBed narrowPeak
  • 3bed bed3+
  • 3bed broadPeak
  • 3bigBed broadPeak
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1fastq
  • 1hdf5
Organism
  • 11Homo sapiens
Biosample type
  • 6primary cell
  • 5in vitro differentiated cells
Organ
  • 410liver
  • 88epithelium
  • 63pancreas
  • 56blood
  • 56bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11connective tissue
  • 11embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 10AMP
  • 1T1D
Genome assembly (visualization)
  • 10hg19
  • 4GRCh38
Lab
  • 10AMP-T2D consortium
  • 1Kyle Gaulton, UCSD
Audit category:
  • 3inconsistent ontology term
BIOSAMPLE
ASSAY

11 results

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Clear Filters
ATAC-seq
DNase-seq
ChIP-seq
Hi-C
RRBS
pCHi-C
primary cell
cardiac fibroblast211
adult endothelial progenitor cell1
brain pericyte1
in vitro differentiated cells
adipocyte41
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