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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 457total RNA-seq
  • 134ChIP-seq
  • 10ATAC-seq
  • 6WGBS
  • 5DNase-seq
  • 2small RNA-seq
  • 1RNA microarray
  • 1pCHi-C
Assay category
  • 459Transcription
  • 134DNA binding
  • 15DNA accessibility
  • 6DNA methylation
Target of assay
  • 71histone
  • 71histone modification
  • 40broad histone mark
  • 33control
  • 30narrow histone mark
  • 30transcription factor
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 443February, 2021
  • 113August, 2017
  • 23October, 2018
  • 10July, 2019
  • 7February, 2023
  • 7June, 2019
  • 6November, 2020
  • 1August, 2018
  • 1August, 2021
  • 1January, 2018
  • 1May, 2023
  • 1November, 2018
  • 1October, 2017
  • 1October, 2019
Available data
  • 550bam
  • 525bigWig
  • 457tsv
  • 86fastq
  • 53bed narrowPeak
  • 22tagAlign
  • 14bigBed narrowPeak
  • 6bed bed3+
  • 6bed broadPeak
  • 5bed bed3
  • 5bigBed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bedpe bed3+
Organism
  • 615Homo sapiens
Biosample type
  • 532tissue
  • 72in vitro differentiated cells
  • 12primary cell
Organ
  • 745pancreas
  • 616connective tissue
  • 474adipose tissue
  • 365liver
  • 355epithelium
  • 352heart
  • 296kidney
  • 190brain
  • 187vasculature
  • 186blood vessel
  • 150bone element
  • 130artery
  • 114limb
  • 74musculature of body
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 19lung
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 616AMP
Genome assembly (visualization)
  • 531hg19
  • 525GRCh38
Lab
  • 616AMP-T2D consortium
Audit category:
  • 5inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 2inconsistent control read length
BIOSAMPLE
ASSAY

616 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue382213
bone tissue58
subcutaneous abdominal adipose tissue363
omental fat pad411121
subcutaneous adipose tissue412111
in vitro differentiated cells
adipocyte460
chondrocyte5
immature adipocyte11
white fat cell1
primary cell
osteoblast411
cardiac fibroblast4
brain pericyte1
hepatic stellate cell1
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