Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 88accessible chromatin
  • 88candidate regulatory elements
  • 51gene expression
  • 48chromatin state
  • 47target gene predictions
  • 31binding sites
  • 25eQTL
  • 25histone modifications
  • 16differential activity
  • 16variant allelic effects
  • 8Fine-mapped variants
  • 2caQTL
  • 2pQTL
  • 2sQTL
Date released
  • 120September, 2022
  • 109February, 2021
  • 32November, 2021
  • 20June, 2020
  • 18February, 2024
  • 17September, 2023
  • 12October, 2022
  • 11August, 2021
  • 10January, 2020
  • 10March, 2025
  • 10May, 2020
  • 10May, 2024
  • 9February, 2020
  • 9March, 2020
  • 7August, 2017
  • 7March, 2023
  • 7November, 2022
  • 6January, 2022
  • 3April, 2020
  • 3May, 2021
  • 3May, 2022
  • 3November, 2020
  • 2January, 2021
  • 2January, 2025
  • 2October, 2019
  • 2September, 2018
  • 1August, 2018
  • 1February, 2023
  • 1January, 2018
  • 1June, 2021
Available data
  • 316bed bed3+
  • 75tsv
  • 55bigWig
  • 41bed bed9
  • 7txt
  • 2bigBed bed9
  • 2csv
  • 1bigBed narrowPeak
Organism
  • 449Homo sapiens
Collection Tags
  • 120EpiMap
  • 65ChIP-Atlas
  • 60ENCODE
  • 57DGA
  • 50AMP
  • 49T2DKP
  • 32 T2DKP
  • 15KPMP
  • 12STARNET
  • 10CMDGA
  • 10GTEx
  • 9HPAP
  • 9T1D
  • 7T2D
  • 6FNIH_projects-heart
  • 6eQTLCatalogue
  • 2FNIH_projects-liver
  • 1BLUEPRINT
Biosample type
  • 270primary cell
  • 102tissue
  • 45in vitro differentiated cells
  • 31cell line
  • 1stem cell
Organ
  • 2909vasculature
  • 2855bodily fluid
  • 2845blood vessel
  • 2844blood
  • 2657vein
  • 899epithelium
  • 652kidney
  • 456brain
  • 449connective tissue
  • 371musculature of body
  • 304lung
  • 275intestine
  • 263pancreas
  • 250heart
  • 241limb
  • 210embryo
  • 194skin of body
  • 166large intestine
  • 159liver
  • 143extraembryonic component
  • 113stomach
  • 109eye
  • 96adipose tissue
  • 89bone element
  • 82mammary gland
  • 81small intestine
  • 80uterus
  • 77artery
  • 76prostate gland
  • 72placenta
  • 67adrenal gland
  • 64ureter
  • 63penis
  • 61lymph node
  • 48gonad
  • 48thymus
  • 43esophagus
  • 42spinal cord
  • 33spleen
  • 26testis
  • 25nerve
  • 24lymphoid tissue
  • 23lymphatic vessel
  • 21ovary
  • 21thyroid gland
  • 19mouth
  • 18skeleton
  • 15bronchus
  • 13bone marrow
  • 12breast
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 3pituitary gland
  • 1pericardium
Project
  • 389AMP
  • 32ENCODE
  • 15KPMP
  • 4ITG
  • 4community
  • 3LungMap
  • 2T1D
Genome assembly (visualization)
  • 364hg19
  • 112GRCh38
  • 2hg18
software_used.software.name!
  • abc
BIOSAMPLE
TYPE

449 results

search-icontable-tab-icon
Clear Filters
accessible chromatin
candidate regulatory elements
gene expression
chromatin state
target gene predictions
binding sites
eQTL
histone modifications
differential activity
variant allelic effects
Fine-mapped variants
caQTL
pQTL
sQTL
primary cell
fibroblast163126
osteoblast5221132
fibroblast of lung6432
foreskin fibroblast161142
pericyte cell10311
tissue
adipose tissue27367141
subcutaneous adipose tissue22618214
omental fat pad2522223
subcutaneous abdominal adipose tissue51
cartilage tissue212
in vitro differentiated cells
adipocyte4416211
mesenchymal stem cell132211
chondrocyte5
fibroblast11
Adipose SGBS cell line (adipocyte)1
cell line
GM23248121111
fibroblast of cardiac tissue212
HT1080211
foreskin fibroblast111
adipose tissue derived mesenchymal stem cell11
stem cell
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego