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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 75ChIP-seq
  • 25ATAC-seq
  • 9DNase-seq
  • 6WGBS
  • 5pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 481Transcription
  • 75DNA binding
  • 34DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Target of assay
  • 78histone
  • histone modification
  • 44broad histone mark
  • 40transcription factor
  • 35control
  • 33narrow histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 455February, 2021
  • 56August, 2017
  • 23October, 2018
  • 18July, 2019
  • 14February, 2023
  • 10June, 2019
  • 6November, 2020
  • 5August, 2021
  • 3October, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2May, 2021
  • 1August, 2018
  • 1January, 2018
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 559bam
  • 535bigWig
  • 478tsv
  • 75fastq
  • 40bed narrowPeak
  • 27bed bed3+
  • 19bigBed narrowPeak
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tagAlign
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 605Homo sapiens
Biosample type
  • 514tissue
  • 60in vitro differentiated cells
  • 31primary cell
  • 1stem cell
Organ
  • 795pancreas
  • 688liver
  • 606connective tissue
  • 459adipose tissue
  • 431epithelium
  • 324kidney
  • 296heart
  • 165vasculature
  • 160blood vessel
  • 159bone element
  • 121artery
  • 99brain
  • 73limb
  • 68blood
  • 68bodily fluid
  • 63musculature of body
  • 58eye
  • 25embryo
  • 20lung
  • 19nerve
  • 19spleen
  • 18ureter
  • 16skeleton
  • 7vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 605AMP
  • 1T1D
Genome assembly (visualization)
  • 554hg19
  • 532GRCh38
Lab
  • 601AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 11inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

606 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue3821331
bone tissue58
subcutaneous adipose tissue712111
omental fat pad511121
white adipose tissue12
in vitro differentiated cells
adipocyte530811
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
osteoblast5211
cardiac fibroblast331
pancreatic stellate cell4
brain pericyte11
mesenchymal stem cell of adipose11
stem cell
mesenchymal stem cell1
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