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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 120ChIP-seq
  • 25ATAC-seq
  • 9DNase-seq
  • 6WGBS
  • 5pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 481Transcription
  • 120DNA binding
  • 34DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Target of assay
  • 78histone
  • 78histone modification
  • 44broad histone mark
  • 40transcription factor
  • 35control
  • narrow histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 455February, 2021
  • 97August, 2017
  • 23October, 2018
  • 18July, 2019
  • 14February, 2023
  • 14June, 2019
  • 6November, 2020
  • 5August, 2021
  • 3October, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2May, 2021
  • 1August, 2018
  • 1January, 2018
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 576bam
  • 552bigWig
  • 478tsv
  • 88fastq
  • 57bed narrowPeak
  • 27bed bed3+
  • 23bigBed narrowPeak
  • 15tagAlign
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 650Homo sapiens
Biosample type
  • 534tissue
  • 81in vitro differentiated cells
  • 35primary cell
  • 1stem cell
Organ
  • 873pancreas
  • 731liver
  • 651connective tissue
  • 479adipose tissue
  • 475epithelium
  • 353heart
  • 339kidney
  • 210vasculature
  • 205blood vessel
  • 169brain
  • 159bone element
  • 135artery
  • 107limb
  • 84musculature of body
  • 68blood
  • 68bodily fluid
  • 58eye
  • 35nerve
  • 29embryo
  • 23spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 16vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 650AMP
  • 1T1D
Genome assembly (visualization)
  • 571hg19
  • 549GRCh38
Lab
  • 646AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 15inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

651 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue3821331
bone tissue58
subcutaneous abdominal adipose tissue253
subcutaneous adipose tissue712111
omental fat pad511121
in vitro differentiated cells
adipocyte551811
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
osteoblast5211
cardiac fibroblast331
mesenchymal stem cell5
pancreatic stellate cell4
brain pericyte11
stem cell
mesenchymal stem cell1
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