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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
114
target gene predictions
101
candidate regulatory elements
53
chromatin state
44
accessible chromatin
38
binding sites
34
gene expression
29
histone modifications
8
eQTL
4
differential activity
4
variant allelic effects
3
Fine-mapped variants
1
caQTL
Date released
151
September, 2022
106
February, 2021
80
February, 2024
23
June, 2020
18
August, 2021
11
March, 2020
11
May, 2021
7
November, 2021
4
August, 2017
4
March, 2023
4
October, 2022
3
January, 2020
3
May, 2020
2
February, 2020
2
May, 2022
1
January, 2022
1
July, 2020
1
November, 2019
1
September, 2018
Available data
333
bed bed3+
49
bed bed9
38
tsv
25
bigWig
3
csv
1
bam
1
bigBed bed9
Organism
433
Homo sapiens
Biosample type
217
cell line
93
tissue
85
primary cell
37
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
426
AMP
7
ENCODE
Genome assembly (visualization)
391
hg19
148
GRCh38
2
hg18
organ_slims!
blood
intestine
BIOSAMPLE
TYPE
433 results
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Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
accessible chromatin
binding sites
gene expression
histone modifications
eQTL
differential activity
variant allelic effects
Fine-mapped variants
caQTL
cell line
H1-hESC
39
1
1
1
2
8
1
HepG2
3
2
2
2
3
5
H9
8
7
1
GM12864
1
2
1
1
2
1
GM12865
1
2
1
1
2
1
+ See 33 more…
tissue
liver
10
13
9
4
1
1
2
7
1
1
chorionic villus
4
8
4
trophoblast
3
4
2
1
1
right lobe of liver
1
2
1
1
1
3
embryonic facial prominence
1
1
1
1
+ See 3 more…
primary cell
hepatocyte
3
1
1
8
1
13
4
2
trophoblast cell
5
7
4
1
1
endothelial cell of hepatic sinusoid
6
6
4
hepatic stellate cell
1
1
1
3
1
1
1
pancreatic endothelial cell
1
3
+ See 4 more…
in vitro differentiated cells
endodermal cell
2
4
2
mesodermal cell
1
4
1
1
trophoblast cell
2
2
1
ectodermal cell
1
2
1
hepatocyte
1
2
1
+ See 5 more…
stem cell
H1-hESC
1
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