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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
15
total RNA-seq
3
DNase-seq
2
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
GRO-seq
1
RRBS
1
pCHi-C
Assay category
59
DNA binding
15
Transcription
5
DNA accessibility
3
DNA methylation
2
3D chromatin structure
Target of assay
33
histone
33
histone modification
17
broad histone mark
17
control
16
narrow histone mark
9
transcription factor
3
other context
3
other post-translational modification
Date released
21
October, 2019
13
December, 2017
13
February, 2018
9
November, 2018
8
August, 2021
7
December, 2018
7
January, 2019
2
July, 2019
2
March, 2020
2
May, 2021
1
January, 2018
1
October, 2017
Available data
81
bam
61
bigWig
51
fastq
41
bed narrowPeak
26
bigBed narrowPeak
16
tsv
6
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
Organism
86
Homo sapiens
Biosample type
29
in vitro differentiated cells
26
tissue
23
primary cell
8
cell line
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
62
hg19
58
GRCh38
1
hg18
Lab
86
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
GRO-seq
RRBS
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
spleen
20
1
2
1
1
pericardium
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
pericardium fibroblast
1
cell line
H1-hESC
8
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