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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
total RNA-seq
15
ChIP-seq
12
ATAC-seq
1
GRO-seq
Assay category
18
Transcription
15
DNA binding
12
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
control
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
9
December, 2017
8
August, 2021
8
February, 2021
8
February, 2023
2
May, 2021
1
January, 2018
Available data
37
bam
29
bigWig
22
bed narrowPeak
20
fastq
14
tsv
4
bed bed3
4
txt
2
bed bed3+
Organism
46
Homo sapiens
Biosample type
22
in vitro differentiated cells
16
tissue
8
cell line
Organ
893
pancreas
681
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
16
skeleton
14
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
40
hg19
36
GRCh38
1
hg18
Lab
46
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
target.investigated_as!
control
other context
BIOSAMPLE
ASSAY
46 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
13
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
cell line
H1-hESC
8
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