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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
14
total RNA-seq
3
DNase-seq
2
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
GRO-seq
1
pCHi-C
Assay category
56
DNA binding
14
Transcription
5
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
33
histone
33
histone modification
17
broad histone mark
17
control
16
narrow histone mark
9
transcription factor
other context
3
other post-translational modification
Date released
21
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
7
December, 2018
7
January, 2019
6
November, 2018
2
March, 2020
2
May, 2021
1
January, 2018
1
October, 2017
Available data
77
bam
57
bigWig
48
fastq
38
bed narrowPeak
23
bigBed narrowPeak
15
tsv
6
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
Organism
81
Homo sapiens
Biosample type
29
in vitro differentiated cells
22
primary cell
22
tissue
8
cell line
Organ
946
pancreas
789
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
22
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
57
hg19
54
GRCh38
1
hg18
Lab
81
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
target.investigated_as!
other context
BIOSAMPLE
ASSAY
81 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
tissue
spleen
17
1
2
1
1
cell line
H1-hESC
8
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