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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 19ChIP-seq
  • 6total RNA-seq
  • 1GRO-seq
Assay category
  • 19DNA binding
  • 6Transcription
Target of assay
  • 10histone
  • 10histone modification
  • 7narrow histone mark
  • 6control
  • 3broad histone mark
  • 3transcription factor
Date released
  • 13February, 2018
  • 10December, 2017
  • 2May, 2021
  • 1January, 2018
Available data
  • 25bam
  • 24fastq
  • 19bigWig
  • 12bed narrowPeak
  • 6tsv
Organism
  • 26Homo sapiens
Biosample type
  • 26in vitro differentiated cells
Organ
  • 883pancreas
  • 673connective tissue
  • 491adipose tissue
  • 436epithelium
  • 381liver
  • 377heart
  • 315kidney
  • 261brain
  • 194vasculature
  • 193blood vessel
  • 158bone element
  • 134artery
  • 117limb
  • 83musculature of body
  • 57eye
  • 43nerve
  • 26embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13blood
  • 13bodily fluid
  • 5gonad
  • 5ovary
  • 4vein
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 26AMP
Genome assembly (visualization)
  • 18GRCh38
  • 18hg19
  • 1hg18
Lab
  • 26AMP-T2D consortium
Audit category:
  • 6inconsistent ontology term
Audit category:
  • 1missing controlled_by
Audit category:
  • 2inconsistent control read length
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

26 results

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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm1541
Hepatic endoderm4
mesodermal cell (lineage marker-negative)1
mesodermal cell (pacemaker intermediate)1
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