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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 14ChIP-seq
  • 14total RNA-seq
  • 1GRO-seq
Assay category
  • 14DNA binding
  • 14Transcription
Target of assay
  • 12histone
  • 12histone modification
  • narrow histone mark
  • 7control
  • 4broad histone mark
  • 3transcription factor
Date released
  • 10February, 2018
  • 8August, 2021
  • 8December, 2017
  • 2May, 2021
  • 1January, 2018
Available data
  • 28bam
  • 22bigWig
  • 19fastq
  • 14tsv
  • 7bed narrowPeak
  • 2bed bed3+
Organism
  • 29Homo sapiens
Biosample type
  • 21in vitro differentiated cells
  • 8cell line
Organ
  • 873pancreas
  • 731liver
  • 651connective tissue
  • 479adipose tissue
  • 475epithelium
  • 353heart
  • 339kidney
  • 210vasculature
  • 205blood vessel
  • 169brain
  • 159bone element
  • 135artery
  • 107limb
  • 84musculature of body
  • 68blood
  • 68bodily fluid
  • 58eye
  • 35nerve
  • 29embryo
  • 23spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 16vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 29AMP
Genome assembly (visualization)
  • 22GRCh38
  • 22hg19
  • 1hg18
Lab
  • 29AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2inconsistent control read length
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

29 results

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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm1241
Hepatic endoderm2
mesodermal cell (lineage marker-negative)1
mesodermal cell (pacemaker intermediate)1
cell line
H1-hESC8
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