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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 130total RNA-seq
  • 109ChIP-seq
  • 103ATAC-seq
  • 70single cell RNA-seq
  • 47WGBS
  • 15DNase-seq
  • 6MeRIP-seq
  • 6RRBS
  • 4Hi-C
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1RNA microarray
Assay category
  • 200Transcription
  • 118DNA accessibility
  • 109DNA binding
  • 53DNA methylation
  • 43D chromatin structure
Target of assay
  • 77histone
  • 77histone modification
  • 42narrow histone mark
  • 35broad histone mark
  • 27control
  • 8transcription factor
  • 7RNA binding protein
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 80May, 2022
  • 61September, 2018
  • 52February, 2023
  • 33April, 2018
  • 33July, 2018
  • 32February, 2021
  • 29August, 2017
  • 26May, 2021
  • 19December, 2017
  • 19September, 2020
  • 18June, 2019
  • 16November, 2019
  • 14October, 2019
  • 10July, 2019
  • 7August, 2020
  • 6August, 2021
  • 6December, 2019
  • 6November, 2020
  • 5March, 2020
  • 5May, 2019
  • 5September, 2017
  • 3August, 2018
  • 3November, 2017
  • 3October, 2022
  • 2October, 2018
  • 1June, 2018
Available data
  • 291bam
  • 278bigWig
  • 254fastq
  • 155tsv
  • 134bed narrowPeak
  • 80zippedFastqFolder
  • 59bigBed narrowPeak
  • 15bed bed3+
  • 14bed broadPeak
  • 14bigBed broadPeak
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 4bedpe bed3+
  • 4hic
  • 3cool
Organism
  • 493Homo sapiens
Biosample type
  • 376primary cell
  • 79cell line
  • 24in vitro differentiated cells
  • 15tissue
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • 524epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 338AMP
  • 152HPAP
  • 4T1D
Genome assembly (visualization)
  • 287hg19
  • 277GRCh38
Lab
  • 336AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 91inconsistent ontology term
  • 4audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
organ_slims!
  • blood vessel
BIOSAMPLE
ASSAY

494 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
MeRIP-seq
RRBS
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell52133512311
pancreatic beta cell21132312161
pancreatic acinar cell489121
pancreatic ductal cell413410
epithelial cell of proximal tubule11011
cell line
EndoC_BH13315196121
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
endothelial cell1
intermediate endothelial cell1
tissue
pigmented layer of retina212
renal glomerulus1
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