Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
232
gene expression
194
accessible chromatin
115
target gene predictions
93
candidate regulatory elements
89
differential activity
49
chromatin state
37
variant allelic effects
32
binding sites
21
histone modifications
3
eQTL
2
caQTL
Date released
181
February, 2021
155
September, 2023
139
September, 2022
121
November, 2021
47
February, 2024
34
March, 2023
33
May, 2021
22
June, 2020
20
August, 2021
20
January, 2021
15
November, 2022
13
January, 2020
13
May, 2020
12
February, 2023
9
February, 2020
6
April, 2020
6
August, 2018
6
October, 2022
5
October, 2019
3
August, 2017
2
March, 2020
2
March, 2024
2
May, 2022
1
November, 2019
Available data
493
bed bed3+
304
tsv
156
bigWig
78
txt
46
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
2
bigBed bed9
Organism
867
Homo sapiens
Biosample type
744
primary cell
61
tissue
43
cell line
19
in vitro differentiated cells
Organ
949
epithelium
652
kidney
465
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
trachea
4
nose
1
pericardium
Project
563
AMP
155
KPMP
121
ENCODE
20
T1D
6
LungMap
2
community
Genome assembly (visualization)
542
hg19
196
GRCh38
organ_slims!
bronchus
liver
trachea
BIOSAMPLE
TYPE
867 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
chromatin state
variant allelic effects
binding sites
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
epithelial cell of proximal tubule
16
1
1
2
1
1
1
glomerular endothelial cell
14
2
1
2
1
1
endothelial cell of umbilical vein
2
4
6
5
1
2
foreskin keratinocyte
4
11
4
+ See 139 more…
tissue
pigmented layer of retina
20
breast epithelium
1
3
5
2
esophagus squamous epithelium
1
2
6
2
kidney epithelium
1
1
pancreatic ductal cell
2
+ See 15 more…
cell line
EndoC_BH1
8
8
1
3
1
keratinocyte
3
1
choroid plexus epithelial cell
1
1
1
colon epithelial cell
1
1
1
epithelial cell of prostate
1
1
1
+ See 6 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
foreskin keratinocyte
1
1
1
mammary gland epithelial cell
1
1
1
pancreatic ductal cell
3
dermis microvascular lymphatic vessel endothelial cell
1
1
+ See 2 more…
See all biosamples
Download