Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 64ChIP-seq
  • 19DNase-seq
  • 17total RNA-seq
  • 13ATAC-seq
  • 6RRBS
  • 4Hi-C
  • 4single cell RNA-seq
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 64DNA binding
  • 33DNA accessibility
  • 21Transcription
  • 6DNA methylation
  • 43D chromatin structure
Target of assay
  • 45histone
  • 45histone modification
  • 23narrow histone mark
  • 22broad histone mark
  • 12control
  • 7RNA binding protein
  • 7transcription factor
  • 1chromatin remodeller
Date released
  • 35October, 2019
  • 20June, 2019
  • 19December, 2017
  • 14February, 2023
  • 13July, 2019
  • 6December, 2019
  • 6November, 2017
  • 5May, 2019
  • 4August, 2021
  • 2April, 2018
  • 2July, 2018
  • 2May, 2021
  • 1March, 2020
Available data
  • 102bam
  • 90bigWig
  • 78bed narrowPeak
  • 54bigBed narrowPeak
  • 29fastq
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 22tsv
  • 21bed bed3+
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 4tagAlign
  • 2hdf5
  • 2hic
  • 1bedpe bed3+
  • 1tar
Organism
  • 129Homo sapiens
Biosample type
  • 91primary cell
  • 21in vitro differentiated cells
  • 15tissue
  • 2cell line
Organ
  • pancreas
  • 791liver
  • 684connective tissue
  • 524epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 129AMP
Genome assembly (visualization)
  • 105hg19
  • 84GRCh38
Lab
  • 129AMP-T2D consortium
Audit category:
  • 14inconsistent ontology term
  • 2audit script error
Audit category:
  • 1inconsistent control read length
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

129 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
RRBS
Hi-C
single cell RNA-seq
FAIRE-seq
RNA microarray
primary cell
endothelial cell of umbilical vein17221
epithelial cell of proximal tubule10111
hepatocyte4151
kidney epithelial cell5111
brain microvascular endothelial cell311
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
endothelial cell1
intermediate endothelial cell1
tissue
pigmented layer of retina212
renal glomerulus1
cell line
glomerular visceral epithelial cell11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego