Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 232gene expression
  • 191accessible chromatin
  • 108target gene predictions
  • 79differential activity
  • 74candidate regulatory elements
  • 39chromatin state
  • 37variant allelic effects
  • 27binding sites
  • 23histone modifications
  • 4eQTL
  • 3caQTL
Date released
  • 169February, 2021
  • 130September, 2023
  • 121November, 2021
  • 115September, 2022
  • 62February, 2024
  • 34March, 2023
  • 33May, 2021
  • 23August, 2021
  • 21June, 2020
  • 20January, 2021
  • 15November, 2022
  • 12February, 2023
  • 10May, 2020
  • 9January, 2020
  • 8February, 2020
  • 6August, 2018
  • 5March, 2020
  • 5October, 2019
  • 4April, 2020
  • 4October, 2022
  • 3July, 2025
  • 2August, 2017
  • 2March, 2024
  • 2May, 2022
  • 1July, 2020
  • 1November, 2019
Available data
  • 462bed bed3+
  • 293tsv
  • 158bigWig
  • 78txt
  • 37bed bed9
  • 14bigBed narrowPeak
  • 6csv
  • 3bam
  • 3bed gappedPeak
  • 3xls
  • 1bed bed3
  • 1bed narrowPeak
Organism
  • 817Homo sapiens
Collection Tags
  • 180DGA
  • 150AMP
  • 142T2DKP
  • 130KPMP
  • 111EpiMap
  • 65ChIP-Atlas
  • 48 T2DKP
  • 45ENCODE
  • 40HPAP
  • 35T1D
  • 30CMDGA
  • 4T2D
  • 2GTEx
Biosample type
  • 696primary cell
  • 61tissue
  • 36cell line
  • 24in vitro differentiated cells
Organ
  • 3365blood
  • vasculature
  • 2861blood vessel
  • 2853bodily fluid
  • 2659vein
  • 952epithelium
  • 903brain
  • 756kidney
  • 518connective tissue
  • 488heart
  • 440lung
  • 386musculature of body
  • 358intestine
  • 319pancreas
  • 296skin of body
  • 244limb
  • 240liver
  • 226large intestine
  • 215embryo
  • 174extraembryonic component
  • 161eye
  • 142adipose tissue
  • 140stomach
  • 111muscle organ
  • 106bone element
  • 104mammary gland
  • 102adrenal gland
  • 97placenta
  • 97small intestine
  • 93thymus
  • 93uterus
  • 88artery
  • 87prostate gland
  • 73ureter
  • 64gonad
  • 64penis
  • 63spleen
  • 62lymph node
  • 60__MARKER__
  • 49spinal cord
  • 48esophagus
  • 47thyroid gland
  • 32ovary
  • 31testis
  • 25nerve
  • 24lymphoid tissue
  • 24skeleton
  • 21lymphatic vessel
  • 21mouth
  • 16bronchus
  • 15breast
  • 13bone marrow
  • 13pituitary gland
  • 13urinary bladder
  • 12tongue
  • 12vagina
  • 5trachea
  • 4nose
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
Project
  • 540AMP
  • 130KPMP
  • 121ENCODE
  • 20T1D
  • 4LungMap
  • 2community
Genome assembly (visualization)
  • 501hg19
  • 197GRCh38
Encyclopedia version
  • 1Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
organ_slims!
  • vasculature
BIOSAMPLE
TYPE

817 results

search-icontable-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
differential activity
candidate regulatory elements
chromatin state
variant allelic effects
binding sites
histone modifications
eQTL
caQTL
primary cell
endothelial cell916722123
hepatocyte138311214
epithelial cell of proximal tubule16112111
glomerular endothelial cell1421211
foreskin keratinocyte4114
tissue
pigmented layer of retina20
breast epithelium1352
esophagus squamous epithelium1262
kidney epithelium11
pancreatic ductal cell2
cell line
EndoC_BH188131
keratinocyte31
colon epithelial cell111
epithelial cell of prostate111
glomerular visceral epithelial cell11
in vitro differentiated cells
retinal pigment epithelial cell6
hepatocyte121
foreskin keratinocyte111
hepatocyte(AFP)3
mammary gland epithelial cell111
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego