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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131total RNA-seq
  • 112ChIP-seq
  • 103ATAC-seq
  • 70single cell RNA-seq
  • 47WGBS
  • 17DNase-seq
  • 6Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1RNA microarray
Assay category
  • 201Transcription
  • 120DNA accessibility
  • 112DNA binding
  • 53DNA methylation
  • 63D chromatin structure
Target of assay
  • 78histone
  • 78histone modification
  • 43narrow histone mark
  • 35broad histone mark
  • 28control
  • 9transcription factor
  • 8RNA binding protein
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 80May, 2022
  • 61September, 2018
  • 52February, 2023
  • 33April, 2018
  • 33July, 2018
  • 32February, 2021
  • 29August, 2017
  • 26May, 2021
  • 20June, 2019
  • 19December, 2017
  • 19September, 2020
  • 16November, 2019
  • 14October, 2019
  • 13July, 2019
  • 7August, 2020
  • 6August, 2021
  • 6December, 2019
  • 6November, 2017
  • 6November, 2020
  • 5March, 2020
  • 5May, 2019
  • 5September, 2017
  • 3August, 2018
  • 3October, 2022
  • 2October, 2018
  • 1June, 2018
Available data
  • 297bam
  • 286bigWig
  • 257fastq
  • 156tsv
  • 138bed narrowPeak
  • 80zippedFastqFolder
  • 63bigBed narrowPeak
  • 19bed bed3+
  • 18bed broadPeak
  • 18bigBed broadPeak
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 4bedpe bed3+
  • 4hic
  • 3cool
  • 2hdf5
Organism
  • 501Homo sapiens
Biosample type
  • 384primary cell
  • 79cell line
  • 24in vitro differentiated cells
  • 15tissue
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • 524epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 346AMP
  • 152HPAP
  • 4T1D
Genome assembly (visualization)
  • 294hg19
  • 282GRCh38
Lab
  • 344AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 91inconsistent ontology term
  • 4audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
organ_slims!
  • vein
BIOSAMPLE
ASSAY

502 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell52133512311
pancreatic beta cell21132312161
pancreatic acinar cell489121
pancreatic ductal cell413410
epithelial cell of proximal tubule11011
cell line
EndoC_BH13315191621
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
endothelial cell1
intermediate endothelial cell1
tissue
pigmented layer of retina212
renal glomerulus1
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