Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
252
gene expression
210
accessible chromatin
122
candidate regulatory elements
121
target gene predictions
92
differential activity
57
chromatin state
55
binding sites
36
variant allelic effects
30
histone modifications
3
eQTL
2
caQTL
Date released
216
February, 2021
163
September, 2022
155
September, 2023
112
November, 2021
71
February, 2024
38
March, 2023
35
May, 2021
32
June, 2020
23
August, 2021
20
January, 2021
15
May, 2020
15
November, 2022
14
January, 2020
12
February, 2023
10
May, 2024
9
February, 2020
8
October, 2022
7
April, 2020
6
August, 2018
6
March, 2020
5
October, 2019
3
August, 2017
2
May, 2022
1
July, 2020
1
March, 2024
1
November, 2019
Available data
575
bed bed3+
323
tsv
167
bigWig
78
txt
54
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
980
Homo sapiens
Biosample type
804
primary cell
102
cell line
48
tissue
26
in vitro differentiated cells
Organ
959
epithelium
652
kidney
468
connective tissue
466
brain
375
musculature of body
311
lung
intestine
277
pancreas
269
vasculature
257
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
158
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
esophagus
43
spinal cord
34
spleen
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
684
AMP
155
KPMP
112
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
632
hg19
233
GRCh38
organ_slims!
esophagus
intestine
testis
BIOSAMPLE
TYPE
980 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
candidate regulatory elements
target gene predictions
differential activity
chromatin state
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
3
7
2
2
1
1
2
hepatocyte
13
8
2
3
1
1
2
4
epithelial cell of proximal tubule
16
1
2
1
1
1
1
glomerular endothelial cell
14
2
2
1
1
1
endothelial cell of umbilical vein
2
6
4
5
2
1
+ See 139 more…
cell line
EndoC_BH1
8
8
1
3
1
GM12864
1
2
1
1
2
1
GM12865
1
2
1
1
2
1
MM.1S
1
2
2
1
1
1
GM10248
1
2
1
1
1
+ See 20 more…
tissue
pigmented layer of retina
20
breast epithelium
1
5
3
2
kidney epithelium
1
1
pancreatic ductal cell
2
breast - mammary tissue
1
+ See 12 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
See all biosamples
Download