Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
255
gene expression
214
accessible chromatin
133
candidate regulatory elements
132
target gene predictions
92
differential activity
64
chromatin state
50
binding sites
41
variant allelic effects
34
histone modifications
4
eQTL
2
caQTL
Date released
221
February, 2021
184
September, 2022
155
September, 2023
123
November, 2021
76
February, 2024
38
March, 2023
35
May, 2021
29
June, 2020
23
August, 2021
20
January, 2021
15
May, 2020
15
November, 2022
14
January, 2020
12
February, 2023
10
May, 2024
9
February, 2020
7
April, 2020
6
August, 2018
6
March, 2020
6
October, 2022
5
October, 2019
4
March, 2024
3
August, 2017
2
May, 2022
1
January, 2022
1
July, 2020
1
November, 2019
Available data
605
bed bed3+
326
tsv
174
bigWig
78
txt
61
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
1021
Homo sapiens
Biosample type
825
primary cell
93
cell line
77
tissue
26
in vitro differentiated cells
Organ
959
epithelium
652
kidney
468
connective tissue
466
brain
375
musculature of body
311
lung
289
intestine
277
pancreas
269
vasculature
257
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
158
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
714
AMP
155
KPMP
123
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
669
hg19
252
GRCh38
organ_slims!
small intestine
BIOSAMPLE
TYPE
1021 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
candidate regulatory elements
target gene predictions
differential activity
chromatin state
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
3
7
2
2
1
1
2
hepatocyte
13
8
2
3
1
1
2
4
epithelial cell of proximal tubule
16
1
2
1
1
1
1
glomerular endothelial cell
14
2
2
1
1
1
endothelial cell of umbilical vein
2
6
4
5
2
1
+ See 144 more…
cell line
EndoC_BH1
8
8
1
3
1
22Rv1
4
2
2
1
1
LNCaP clone FGC
3
2
2
PC-3
1
2
1
1
1
1
RWPE1
1
2
1
1
1
1
+ See 15 more…
tissue
pigmented layer of retina
20
prostate gland
1
4
2
2
2
2
1
breast epithelium
1
5
3
2
esophagus squamous epithelium
1
6
2
2
kidney epithelium
1
1
+ See 18 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
See all biosamples
Download