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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 129ChIP-seq
  • 103ATAC-seq
  • 47WGBS
  • 19DNase-seq
  • 8Hi-C
  • 6RRBS
  • 5total RNA-seq
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
Assay category
  • 129DNA binding
  • 123DNA accessibility
  • 53DNA methylation
  • 83D chromatin structure
  • 5Transcription
Target of assay
  • 93histone
  • 93histone modification
  • 49narrow histone mark
  • 44broad histone mark
  • 27control
  • 9transcription factor
  • 8RNA binding protein
  • 1chromatin remodeller
Date released
  • 80May, 2022
  • 35September, 2018
  • 32October, 2019
  • 29August, 2017
  • 20June, 2019
  • 20May, 2021
  • 19December, 2017
  • 15November, 2019
  • 13February, 2023
  • 13July, 2019
  • 7August, 2020
  • 6August, 2021
  • 6February, 2021
  • 6November, 2017
  • 5May, 2019
  • 5September, 2017
  • 4March, 2020
  • 3October, 2022
  • 3September, 2020
Available data
  • 176bam
  • 160bigWig
  • 151bed narrowPeak
  • 110fastq
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 12tsv
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 320Homo sapiens
Biosample type
  • 248primary cell
  • 39cell line
  • 22in vitro differentiated cells
  • 12tissue
Organ
  • 601liver
  • 457pancreas
  • 321epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 209connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 91adipose tissue
  • 88musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 11lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 220AMP
  • 99HPAP
  • 2T1D
Genome assembly (visualization)
  • 170hg19
  • 153GRCh38
Lab
  • 222AMP-T2D consortium
  • 99Klaus Kaestner, Upenn
Audit category:
  • 50inconsistent ontology term
  • 4audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

321 results

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Clear Filters
ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
total RNA-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
primary cell
pancreatic alpha cell1335311
pancreatic beta cell1323161
endothelial cell of umbilical vein17221
pancreatic acinar cell891
pancreatic ductal cell134
cell line
EndoC_BH11519121
glomerular visceral epithelial cell1
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
tissue
pigmented layer of retina12
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