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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 125ChIP-seq
  • 122total RNA-seq
  • 103ATAC-seq
  • 47WGBS
  • 15DNase-seq
  • 10single cell RNA-seq
  • 6MeRIP-seq
  • 6RRBS
  • 4Hi-C
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 132Transcription
  • 125DNA binding
  • 119DNA accessibility
  • 53DNA methylation
  • 43D chromatin structure
Target of assay
  • 90histone
  • 90histone modification
  • 47narrow histone mark
  • 43broad histone mark
  • 29control
  • 9transcription factor
  • 8RNA binding protein
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 80May, 2022
  • 61September, 2018
  • 52February, 2023
  • 32February, 2021
  • 31October, 2019
  • 29August, 2017
  • 24May, 2021
  • 19December, 2017
  • 19September, 2020
  • 18June, 2019
  • 16November, 2019
  • 8July, 2019
  • 7August, 2020
  • 6April, 2018
  • 6December, 2019
  • 6November, 2017
  • 6November, 2020
  • 5March, 2020
  • 5May, 2019
  • 5September, 2017
  • 3July, 2018
  • 2August, 2021
  • 2October, 2018
  • 1June, 2018
Available data
  • 242bam
  • 227bigWig
  • 199fastq
  • 146bed narrowPeak
  • 87tsv
  • 80zippedFastqFolder
  • 74bigBed narrowPeak
  • 20bed broadPeak
  • 20bigBed broadPeak
  • 16bed bed3+
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 3tagAlign
  • 2hdf5
  • 2hic
  • 1bedpe bed3+
  • 1tar
Organism
  • 442Homo sapiens
Biosample type
  • 327primary cell
  • 79cell line
  • 22in vitro differentiated cells
  • 15tissue
Organ
  • 808pancreas
  • 775liver
  • 627connective tissue
  • 474adipose tissue
  • 443epithelium
  • 368heart
  • 335kidney
  • 229vasculature
  • 223blood vessel
  • 215brain
  • 151bone element
  • 137artery
  • 119limb
  • 87musculature of body
  • 67blood
  • 67bodily fluid
  • 58eye
  • 42nerve
  • 35embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 290AMP
  • 149HPAP
  • 4T1D
Genome assembly (visualization)
  • 235hg19
  • 220GRCh38
Lab
  • 288AMP-T2D consortium
  • 149Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 90inconsistent ontology term
  • 2audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

443 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
single cell RNA-seq
MeRIP-seq
RRBS
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell135235311
pancreatic beta cell132123161
pancreatic acinar cell8494
pancreatic ductal cell13441
endothelial cell of umbilical vein17211
cell line
EndoC_BH11533196121
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
tissue
pigmented layer of retina212
renal glomerulus1
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