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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 123total RNA-seq
  • 101ATAC-seq
  • 83ChIP-seq
  • 70single cell RNA-seq
  • 41WGBS
  • 8DNase-seq
  • 6Hi-C
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1RNA microarray
Assay category
  • 193Transcription
  • 109DNA accessibility
  • 83DNA binding
  • 41DNA methylation
  • 63D chromatin structure
Target of assay
  • 57histone
  • 57histone modification
  • 31narrow histone mark
  • 26broad histone mark
  • 24control
  • 2transcription factor
  • 1RNA binding protein
Date released
  • 80May, 2022
  • 61September, 2018
  • 52February, 2023
  • 33April, 2018
  • 33July, 2018
  • 28August, 2017
  • 26February, 2021
  • 25May, 2021
  • 19September, 2020
  • 16November, 2019
  • 15October, 2019
  • 7August, 2020
  • 7June, 2019
  • 6August, 2021
  • 5July, 2019
  • 5September, 2017
  • 4December, 2017
  • 3August, 2018
  • 3October, 2022
  • 2November, 2017
  • 2October, 2018
  • 1December, 2019
  • 1June, 2018
  • 1March, 2020
  • 1May, 2019
Available data
  • 251bam
  • 237bigWig
  • 231fastq
  • 141tsv
  • 101bed narrowPeak
  • 80zippedFastqFolder
  • 28bigBed narrowPeak
  • 9bed bed3+
  • 7tagAlign
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 6hic
  • 5bedpe bed3+
  • 3cool
Organism
  • 435Homo sapiens
Biosample type
  • 347primary cell
  • 65cell line
  • 15tissue
  • 9in vitro differentiated cells
Organ
  • 883pancreas
  • 673connective tissue
  • 491adipose tissue
  • 436epithelium
  • 381liver
  • 377heart
  • 315kidney
  • 261brain
  • 194vasculature
  • 193blood vessel
  • 158bone element
  • 134artery
  • 117limb
  • 83musculature of body
  • 57eye
  • 43nerve
  • 26embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13blood
  • 13bodily fluid
  • 5gonad
  • 5ovary
  • 4vein
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 290AMP
  • 146HPAP
Genome assembly (visualization)
  • 243hg19
  • 237GRCh38
Lab
  • 290AMP-T2D consortium
  • 146Klaus Kaestner, Upenn
Audit category:
  • 73inconsistent ontology term
  • 5audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

436 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell52351312251
pancreatic beta cell21231212161
pancreatic acinar cell498121
pancreatic ductal cell441310
pancreatic delta cell11
cell line
EndoC_BH1311713121
tissue
pigmented layer of retina212
renal glomerulus1
in vitro differentiated cells
Hepatic endoderm4
pancreatic PP cell3
endothelial cell1
intermediate endothelial cell1
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