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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 60single cell RNA-seq
  • 50ChIP-seq
  • 17total RNA-seq
  • 15DNase-seq
  • 6Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 6WGBS
  • 2ATAC-seq
  • 1FAIRE-seq
Assay category
  • 77Transcription
  • 50DNA binding
  • 18DNA accessibility
  • 12DNA methylation
  • 63D chromatin structure
Target of assay
  • 39histone
  • 39histone modification
  • 20narrow histone mark
  • 19broad histone mark
  • 7RNA binding protein
  • 7control
  • 7transcription factor
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 30July, 2018
  • 27April, 2018
  • 24October, 2019
  • 15December, 2017
  • 15June, 2019
  • 13July, 2019
  • 6February, 2021
  • 6March, 2020
  • 6November, 2020
  • 5December, 2019
  • 4August, 2021
  • 4May, 2019
  • 4November, 2017
  • 3August, 2018
  • 3May, 2021
  • 3October, 2022
  • 1August, 2017
Available data
  • 141bam
  • 138bigWig
  • 84fastq
  • 84tsv
  • 55bed narrowPeak
  • 50bigBed narrowPeak
  • 18bed broadPeak
  • 18bigBed broadPeak
  • 17bed bed3+
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 4bedpe bed3+
  • 4hic
  • 4tagAlign
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 169Homo sapiens
Biosample type
  • 138primary cell
  • 17in vitro differentiated cells
  • 14cell line
Organ
  • 426liver
  • 201pancreas
  • 169epithelium
  • 96brain
  • 68connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 156AMP
  • 9HPAP
  • 4T1D
Genome assembly (visualization)
  • 144hg19
  • 131GRCh38
Lab
  • 154AMP-T2D consortium
  • 9Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 19inconsistent ontology term
  • 3audit script error
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

169 results

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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
MeRIP-seq
RRBS
WGBS
ATAC-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein16111
pancreatic alpha cell1116
pancreatic beta cell1111
hepatocyte451
pancreatic delta cell10
in vitro differentiated cells
hepatocyte15
endothelial cell1
intermediate endothelial cell1
cell line
EndoC_BH12262
glomerular visceral epithelial cell11
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