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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
single cell RNA-seq
9
total RNA-seq
4
ChIP-seq
4
DNase-seq
4
Hi-C
Assay category
69
Transcription
4
3D chromatin structure
4
DNA accessibility
4
DNA binding
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
30
July, 2018
27
April, 2018
5
July, 2019
4
August, 2021
4
October, 2019
3
August, 2018
3
October, 2022
2
June, 2019
2
May, 2021
1
March, 2020
Available data
75
bam
74
bigWig
69
tsv
58
fastq
5
bed bed3+
5
bed narrowPeak
4
bedpe bed3+
4
hic
4
tagAlign
3
cool
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Organism
81
Homo sapiens
Biosample type
79
primary cell
2
in vitro differentiated cells
Organ
138
pancreas
81
epithelium
71
brain
57
connective tissue
25
heart
19
kidney
17
adipose tissue
16
liver
9
musculature of body
8
bone element
8
skeleton
7
blood vessel
7
vasculature
4
artery
3
eye
3
limb
2
blood
2
bodily fluid
2
embryo
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
78
AMP
3
HPAP
Genome assembly (visualization)
76
hg19
74
GRCh38
Lab
78
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
81 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
DNase-seq
Hi-C
primary cell
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic delta cell
10
pancreatic acinar cell
8
1
pancreatic ductal cell
9
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in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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