Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 60single cell RNA-seq
  • 9total RNA-seq
  • 4ChIP-seq
  • 4DNase-seq
  • 4Hi-C
Assay category
  • 69Transcription
  • 43D chromatin structure
  • 4DNA accessibility
  • 4DNA binding
Target of assay
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1broad histone mark
  • 1control
Date released
  • 30July, 2018
  • 27April, 2018
  • 5July, 2019
  • 4August, 2021
  • 4October, 2019
  • 3August, 2018
  • 3October, 2022
  • 2June, 2019
  • 2May, 2021
  • 1March, 2020
Available data
  • 75bam
  • 74bigWig
  • 69tsv
  • 58fastq
  • 5bed bed3+
  • 5bed narrowPeak
  • 4bedpe bed3+
  • 4hic
  • 4tagAlign
  • 3cool
  • 2bed broadPeak
  • 2bigBed broadPeak
  • 2bigBed narrowPeak
Organism
  • 81Homo sapiens
Biosample type
  • 79primary cell
  • 2in vitro differentiated cells
Organ
  • 138pancreas
  • 81epithelium
  • 71brain
  • 57connective tissue
  • 25heart
  • 19kidney
  • 17adipose tissue
  • 16liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 78AMP
  • 3HPAP
Genome assembly (visualization)
  • 76hg19
  • 74GRCh38
Lab
  • 78AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
Audit category:
  • 3audit script error
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

81 results

search-icontable-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
DNase-seq
Hi-C
primary cell
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
pancreatic ductal cell9
in vitro differentiated cells
endothelial cell1
intermediate endothelial cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego