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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
11
DNase-seq
8
total RNA-seq
6
MeRIP-seq
6
RRBS
6
WGBS
2
ATAC-seq
2
Hi-C
1
FAIRE-seq
Assay category
46
DNA binding
14
DNA accessibility
12
DNA methylation
8
Transcription
2
3D chromatin structure
Target of assay
36
histone
36
histone modification
18
broad histone mark
18
narrow histone mark
7
RNA binding protein
7
transcription factor
6
control
3
nucleotide modification
1
chromatin remodeller
Date released
20
October, 2019
15
December, 2017
13
June, 2019
8
July, 2019
6
February, 2021
6
November, 2020
5
December, 2019
5
March, 2020
4
May, 2019
4
November, 2017
1
August, 2017
1
May, 2021
Available data
66
bam
64
bigWig
50
bed narrowPeak
48
bigBed narrowPeak
26
fastq
16
bed broadPeak
16
bigBed broadPeak
15
tsv
12
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
2
hdf5
1
tar
Organism
88
Homo sapiens
Biosample type
59
primary cell
15
in vitro differentiated cells
14
cell line
Organ
410
liver
88
epithelium
63
pancreas
56
blood
56
bodily fluid
42
vasculature
39
kidney
37
blood vessel
25
brain
18
vein
16
heart
13
musculature of body
11
connective tissue
11
embryo
7
artery
5
limb
4
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
1
thymus
Project
78
AMP
6
HPAP
4
T1D
Genome assembly (visualization)
68
hg19
57
GRCh38
Lab
76
AMP-T2D consortium
6
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
18
inconsistent ontology term
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
total RNA-seq
MeRIP-seq
RRBS
WGBS
ATAC-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
16
1
1
hepatocyte
5
1
kidney epithelial cell
4
1
1
pancreatic alpha cell
6
brain microvascular endothelial cell
2
1
1
+ See 8 more…
in vitro differentiated cells
hepatocyte
15
cell line
EndoC_BH1
2
2
6
2
glomerular visceral epithelial cell
1
1
See all biosamples
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