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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 46ChIP-seq
  • 11DNase-seq
  • 8total RNA-seq
  • 6MeRIP-seq
  • 6RRBS
  • 6WGBS
  • 2ATAC-seq
  • 2Hi-C
  • 1FAIRE-seq
Assay category
  • 46DNA binding
  • 14DNA accessibility
  • 12DNA methylation
  • 8Transcription
  • 23D chromatin structure
Target of assay
  • 36histone
  • 36histone modification
  • 18broad histone mark
  • 18narrow histone mark
  • 7RNA binding protein
  • 7transcription factor
  • 6control
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 20October, 2019
  • 15December, 2017
  • 13June, 2019
  • 8July, 2019
  • 6February, 2021
  • 6November, 2020
  • 5December, 2019
  • 5March, 2020
  • 4May, 2019
  • 4November, 2017
  • 1August, 2017
  • 1May, 2021
Available data
  • 66bam
  • 64bigWig
  • 50bed narrowPeak
  • 48bigBed narrowPeak
  • 26fastq
  • 16bed broadPeak
  • 16bigBed broadPeak
  • 15tsv
  • 12bed bed3+
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 88Homo sapiens
Biosample type
  • 59primary cell
  • 15in vitro differentiated cells
  • 14cell line
Organ
  • 410liver
  • 88epithelium
  • 63pancreas
  • 56blood
  • 56bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11connective tissue
  • 11embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 78AMP
  • 6HPAP
  • 4T1D
Genome assembly (visualization)
  • 68hg19
  • 57GRCh38
Lab
  • 76AMP-T2D consortium
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 18inconsistent ontology term
BIOSAMPLE
ASSAY

88 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
MeRIP-seq
RRBS
WGBS
ATAC-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein1611
hepatocyte51
kidney epithelial cell411
pancreatic alpha cell6
brain microvascular endothelial cell211
in vitro differentiated cells
hepatocyte15
cell line
EndoC_BH12262
glomerular visceral epithelial cell11
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