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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 114total RNA-seq
  • 101ATAC-seq
  • 79ChIP-seq
  • 41WGBS
  • 10single cell RNA-seq
  • 4DNase-seq
  • 2Capture-C
  • 2Hi-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1RNA microarray
Assay category
  • 124Transcription
  • 105DNA accessibility
  • 79DNA binding
  • 41DNA methylation
  • 23D chromatin structure
Target of assay
  • 54histone
  • 54histone modification
  • 29narrow histone mark
  • 25broad histone mark
  • 23control
  • 2transcription factor
  • 1RNA binding protein
Date released
  • 80May, 2022
  • 61September, 2018
  • 52February, 2023
  • 28August, 2017
  • 26February, 2021
  • 23May, 2021
  • 19September, 2020
  • 16November, 2019
  • 11October, 2019
  • 7August, 2020
  • 6April, 2018
  • 5June, 2019
  • 5September, 2017
  • 4December, 2017
  • 3July, 2018
  • 2August, 2021
  • 2November, 2017
  • 2October, 2018
  • 1December, 2019
  • 1June, 2018
  • 1May, 2019
Available data
  • 176bam
  • 173fastq
  • 163bigWig
  • 96bed narrowPeak
  • 80zippedFastqFolder
  • 72tsv
  • 26bigBed narrowPeak
  • 4bed bed3+
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 3tagAlign
  • 2hic
  • 1bedpe bed3+
Organism
  • 354Homo sapiens
Biosample type
  • 268primary cell
  • 65cell line
  • 15tissue
  • 7in vitro differentiated cells
Organ
  • 745pancreas
  • 616connective tissue
  • 474adipose tissue
  • 365liver
  • 355epithelium
  • 352heart
  • 296kidney
  • 190brain
  • 187vasculature
  • 186blood vessel
  • 150bone element
  • 130artery
  • 114limb
  • 74musculature of body
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 19lung
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 212AMP
  • 143HPAP
Genome assembly (visualization)
  • 167hg19
  • 163GRCh38
Lab
  • 212AMP-T2D consortium
  • 143Klaus Kaestner, Upenn
Audit category:
  • 72inconsistent ontology term
  • 2audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
BIOSAMPLE
ASSAY

355 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
DNase-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell523513251
pancreatic beta cell212312161
pancreatic acinar cell4984
pancreatic ductal cell44131
epithelial cell of proximal tubule8
cell line
EndoC_BH1311713211
tissue
pigmented layer of retina212
renal glomerulus1
in vitro differentiated cells
Hepatic endoderm4
pancreatic PP cell3
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