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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131total RNA-seq
  • 103ATAC-seq
  • 102ChIP-seq
  • 70single cell RNA-seq
  • 47WGBS
  • 19DNase-seq
  • 8Hi-C
  • 6RRBS
  • 3MeRIP-seq
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 201Transcription
  • 123DNA accessibility
  • 102DNA binding
  • 53DNA methylation
  • 83D chromatin structure
Target of assay
  • 93histone
  • 93histone modification
  • 49narrow histone mark
  • 44broad histone mark
  • control
  • 9transcription factor
  • 8RNA binding protein
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 80May, 2022
  • 61September, 2018
  • 52February, 2023
  • 33April, 2018
  • 33July, 2018
  • 32February, 2021
  • 32October, 2019
  • 25May, 2021
  • 19September, 2020
  • 18June, 2019
  • 17August, 2017
  • 16December, 2017
  • 14November, 2019
  • 13July, 2019
  • 7August, 2020
  • 6December, 2019
  • 6March, 2020
  • 5August, 2021
  • 5September, 2017
  • 4May, 2019
  • 4November, 2017
  • 3August, 2018
  • 3November, 2020
  • 3October, 2022
  • 2October, 2018
  • 1June, 2018
Available data
  • 299bigWig
  • 290bam
  • 240fastq
  • 156tsv
  • 151bed narrowPeak
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 5tagAlign
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 493Homo sapiens
Biosample type
  • 385primary cell
  • 74cell line
  • 20in vitro differentiated cells
  • 15tissue
Organ
  • 893pancreas
  • 683liver
  • 649connective tissue
  • 494epithelium
  • 467adipose tissue
  • 373heart
  • 342kidney
  • 255brain
  • 214vasculature
  • 209blood vessel
  • 159bone element
  • 132artery
  • 105limb
  • 90musculature of body
  • 63blood
  • 63bodily fluid
  • 60eye
  • 32nerve
  • 30embryo
  • 20lung
  • 20vein
  • 18ureter
  • 17spleen
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 338AMP
  • 152HPAP
  • 4T1D
Genome assembly (visualization)
  • 309hg19
  • 294GRCh38
Lab
  • 339AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 3Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 82inconsistent ontology term
  • 5audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

494 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
RRBS
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell5235712311
pancreatic beta cell2123712161
pancreatic acinar cell498121
pancreatic ductal cell441310
endothelial cell of umbilical vein15221
cell line
EndoC_BH13319131321
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte14
Hepatic endoderm2
pancreatic PP cell2
endothelial cell1
intermediate endothelial cell1
tissue
pigmented layer of retina212
renal glomerulus1
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