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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131total RNA-seq
  • 103ATAC-seq
  • 70single cell RNA-seq
  • 47WGBS
  • 36ChIP-seq
  • 19DNase-seq
  • 8Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 201Transcription
  • 123DNA accessibility
  • 53DNA methylation
  • 36DNA binding
  • 83D chromatin structure
Target of assay
  • 93histone
  • histone modification
  • 49narrow histone mark
  • 44broad histone mark
  • 30control
  • 9transcription factor
  • 8RNA binding protein
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 80May, 2022
  • 52February, 2023
  • 40September, 2018
  • 33April, 2018
  • 33July, 2018
  • 32February, 2021
  • 24May, 2021
  • 19September, 2020
  • 18June, 2019
  • 15August, 2017
  • 14October, 2019
  • 13July, 2019
  • 7August, 2020
  • 6December, 2019
  • 6November, 2019
  • 6November, 2020
  • 5December, 2017
  • 5March, 2020
  • 5September, 2017
  • 4November, 2017
  • 3August, 2018
  • 3August, 2021
  • 3October, 2022
  • 2May, 2019
  • 2October, 2018
  • 1June, 2018
Available data
  • 224bam
  • 211bigWig
  • 206fastq
  • 156tsv
  • 80zippedFastqFolder
  • 63bed narrowPeak
  • 47bigBed narrowPeak
  • 18bed bed3+
  • 18bed broadPeak
  • 18bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 3tagAlign
  • 2hdf5
  • 1tar
Organism
  • 430Homo sapiens
Biosample type
  • 340primary cell
  • 67cell line
  • 15tissue
  • 9in vitro differentiated cells
Organ
  • 795pancreas
  • 688liver
  • 606connective tissue
  • 459adipose tissue
  • 431epithelium
  • 324kidney
  • 296heart
  • 165vasculature
  • 160blood vessel
  • 159bone element
  • 121artery
  • 99brain
  • 73limb
  • 68blood
  • 68bodily fluid
  • 63musculature of body
  • 58eye
  • 25embryo
  • 20lung
  • 19nerve
  • 19spleen
  • 18ureter
  • 16skeleton
  • 7vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 277AMP
  • 152HPAP
  • 2T1D
Genome assembly (visualization)
  • 221hg19
  • 206GRCh38
Lab
  • 273AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 75inconsistent ontology term
  • 5audit script error
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

431 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
ChIP-seq
DNase-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell5235123161
pancreatic beta cell2123121661
pancreatic acinar cell49121
pancreatic ductal cell4410
pancreatic delta cell11
cell line
EndoC_BH1331931621
glomerular visceral epithelial cell11
tissue
pigmented layer of retina212
renal glomerulus1
in vitro differentiated cells
hepatocyte3
Hepatic endoderm2
pancreatic PP cell2
endothelial cell1
intermediate endothelial cell1
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