Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
100
accessible chromatin
81
candidate regulatory elements
54
target gene predictions
44
chromatin state
29
gene expression
22
binding sites
19
histone modifications
15
eQTL
8
variant allelic effects
4
differential activity
3
Fine-mapped variants
1
caQTL
Date released
127
September, 2022
74
February, 2021
32
February, 2024
24
February, 2023
22
November, 2022
17
June, 2020
15
November, 2021
12
March, 2020
10
August, 2021
7
January, 2022
5
January, 2020
5
May, 2020
4
February, 2020
4
March, 2023
4
March, 2024
4
May, 2021
4
October, 2022
3
August, 2017
2
May, 2022
2
May, 2024
1
July, 2020
1
November, 2019
1
September, 2018
Available data
286
bed bed3+
70
bigWig
41
bed bed9
34
tsv
3
csv
1
bam
1
bigBed bed9
Organism
380
Homo sapiens
Biosample type
220
tissue
102
primary cell
45
cell line
13
in vitro differentiated cells
Organ
959
epithelium
652
kidney
468
connective tissue
466
brain
375
musculature of body
311
lung
289
intestine
277
pancreas
269
vasculature
257
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
158
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
365
AMP
15
ENCODE
Genome assembly (visualization)
336
hg19
116
GRCh38
2
hg18
BIOSAMPLE
TYPE
380 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
candidate regulatory elements
target gene predictions
chromatin state
gene expression
binding sites
histone modifications
eQTL
variant allelic effects
differential activity
Fine-mapped variants
caQTL
tissue
liver
4
13
10
9
1
1
2
7
1
1
retina
23
6
3
3
1
1
1
1
1
ovary
1
8
6
4
1
1
pigmented layer of retina
20
testis
1
7
3
3
1
1
1
1
+ See 20 more…
primary cell
hepatocyte
8
2
3
1
13
1
4
2
endothelial cell of hepatic sinusoid
6
4
6
hepatic stellate cell
3
2
1
1
1
1
1
retinal pigment epithelial cell
3
2
1
1
2
1
epithelial cell of esophagus
2
1
1
2
+ See 11 more…
cell line
HepG2
2
2
3
2
3
5
WERI-Rb-1
1
2
1
1
2
1
HuH-7
1
1
1
1
1
1
NT2-D1 cell
1
1
1
1
2
HuH-7.5
1
1
1
+ See 4 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
hepatocyte(AFP)
3
See all biosamples
Download