Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
248
candidate regulatory elements
160
target gene predictions
133
chromatin state
62
accessible chromatin
29
gene expression
28
histone modifications
22
binding sites
13
eQTL
9
variant allelic effects
4
differential activity
3
Fine-mapped variants
1
caQTL
Date released
378
September, 2022
159
February, 2021
37
February, 2024
36
November, 2021
24
June, 2020
14
May, 2021
13
March, 2020
10
August, 2021
8
August, 2017
6
January, 2022
5
March, 2024
4
March, 2023
3
January, 2020
3
May, 2020
3
October, 2022
2
February, 2020
2
May, 2022
2
May, 2024
1
July, 2020
1
November, 2019
1
September, 2018
Available data
536
bed bed3+
125
bed bed9
42
bigWig
33
tsv
3
csv
1
bam
1
bigBed bed9
Organism
712
Homo sapiens
Biosample type
496
tissue
139
primary cell
65
cell line
12
in vitro differentiated cells
Organ
959
epithelium
652
kidney
468
connective tissue
466
brain
375
musculature of body
311
lung
289
intestine
277
pancreas
269
vasculature
257
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
158
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
676
AMP
36
ENCODE
Genome assembly (visualization)
670
hg19
211
GRCh38
2
hg18
BIOSAMPLE
TYPE
712 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
gene expression
histone modifications
binding sites
eQTL
variant allelic effects
differential activity
Fine-mapped variants
caQTL
tissue
stomach
40
21
19
3
1
1
1
small intestine
29
17
15
1
1
placenta
26
15
14
1
2
1
1
large intestine
27
14
13
1
1
liver
13
10
9
4
1
2
1
7
1
1
+ See 29 more…
primary cell
hepatocyte
2
3
1
8
13
4
1
2
trophoblast cell
7
5
4
1
1
endothelial cell of hepatic sinusoid
6
4
6
hepatic stellate cell
2
1
1
3
1
1
1
fibroblast of villous mesenchyme
2
1
1
1
1
2
+ See 22 more…
cell line
HepG2
2
3
2
2
5
3
HT-29
2
2
1
1
1
1
SW480
2
1
1
1
1
1
HCT116
2
3
1
HuH-7
1
1
1
1
1
1
+ See 8 more…
in vitro differentiated cells
trophoblast cell
2
2
1
hepatocyte
2
1
1
hepatocyte(AFP)
3
See all biosamples
Download