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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
42
DNase-seq
36
ATAC-seq
26
total RNA-seq
6
Hi-C
4
pCHi-C
1
FAIRE-seq
1
RRBS
1
WGBS
Assay category
88
DNA binding
79
DNA accessibility
26
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
67
histone
67
histone modification
43
broad histone mark
24
narrow histone mark
20
control
1
RNA binding protein
1
transcription factor
Date released
111
October, 2019
39
June, 2019
31
February, 2023
7
May, 2019
6
February, 2021
6
July, 2019
4
February, 2020
1
March, 2020
Available data
141
bam
138
bed narrowPeak
112
bigWig
103
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
42
bed bed3+
12
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
Organism
205
Homo sapiens
Biosample type
178
tissue
27
primary cell
Organ
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
205
AMP
Genome assembly (visualization)
147
hg19
114
GRCh38
Lab
205
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
heart
pancreas
BIOSAMPLE
ASSAY
205 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
islet of Langerhans
3
1
14
4
muscle of leg
7
13
1
retina
3
15
3
+ See 11 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
retinal pigment epithelial cell
3
1
1
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