Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
164
candidate regulatory elements
89
target gene predictions
86
accessible chromatin
83
chromatin state
13
binding sites
12
gene expression
11
histone modifications
9
variant allelic effects
8
eQTL
6
Fine-mapped variants
2
caQTL
1
differential activity
Date released
231
September, 2022
109
February, 2021
24
February, 2023
22
November, 2022
16
February, 2024
15
November, 2021
12
June, 2020
9
March, 2020
8
February, 2020
7
January, 2020
7
May, 2020
6
May, 2021
5
October, 2022
3
August, 2017
3
May, 2022
2
March, 2024
2
May, 2019
1
August, 2021
1
January, 2022
1
October, 2019
Available data
379
bed bed3+
80
bed bed9
52
bigWig
16
tsv
3
bigBed bed9
Organism
484
Homo sapiens
Biosample type
376
tissue
73
primary cell
27
cell line
8
in vitro differentiated cells
Organ
959
epithelium
652
kidney
468
connective tissue
466
brain
375
musculature of body
311
lung
289
intestine
277
pancreas
269
vasculature
257
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
158
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
469
AMP
15
ENCODE
Genome assembly (visualization)
474
hg19
112
GRCh38
organ_slims!
artery
spleen
BIOSAMPLE
TYPE
484 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
chromatin state
binding sites
gene expression
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
caQTL
differential activity
tissue
muscle of arm
33
16
1
16
1
muscle of leg
27
14
2
15
muscle of back
28
13
13
retina
6
3
23
3
1
1
1
1
1
pigmented layer of retina
20
+ See 22 more…
primary cell
skeletal muscle satellite cell
2
2
5
2
2
retinal pigment epithelial cell
2
1
3
1
2
1
skeletal muscle fiber
5
2
2
type I muscle cell
1
3
1
1
1
type II muscle cell
1
3
1
1
1
+ See 10 more…
cell line
WERI-Rb-1
2
1
1
1
2
1
LHCN-M2
2
1
1
1
1
1
A673
2
2
1
SJCRH30
2
1
1
1
fibroblast of the conjunctiva
1
+ See 1 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
myotube
1
1
See all biosamples
Download