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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
29
ATAC-seq
24
DNase-seq
24
total RNA-seq
5
pCHi-C
1
RRBS
Assay category
53
DNA accessibility
40
DNA binding
24
Transcription
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
12
control
11
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
63
October, 2019
31
February, 2023
25
June, 2019
2
February, 2020
1
July, 2019
1
March, 2020
Available data
78
bed narrowPeak
67
bam
55
bigWig
50
bigBed narrowPeak
24
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
11
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
123
Homo sapiens
Biosample type
118
tissue
5
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
123
AMP
Genome assembly (visualization)
83
hg19
55
GRCh38
Lab
123
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
123 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
pCHi-C
RRBS
tissue
tibial nerve
35
1
2
5
islet of Langerhans
2
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
renal pelvis
10
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primary cell
retinal pigment epithelial cell
3
1
1
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