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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
5
pCHi-C
4
DNase-seq
3
ChIP-seq
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
3
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
RNA binding protein
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
5
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
32
bed narrowPeak
6
tsv
5
bam
5
bigBed narrowPeak
5
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
60
Homo sapiens
Biosample type
57
tissue
3
primary cell
Organ
884
pancreas
639
connective tissue
625
liver
486
epithelium
462
adipose tissue
362
heart
339
kidney
252
brain
209
vasculature
205
blood vessel
159
bone element
131
artery
105
limb
90
musculature of body
59
eye
53
blood
53
bodily fluid
32
nerve
30
embryo
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
33
hg19
5
GRCh38
Lab
60
AMP-T2D consortium
organ_slims!
lung
target.investigated_as!
RNA binding protein
control
BIOSAMPLE
ASSAY
60 results
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ATAC-seq
total RNA-seq
pCHi-C
DNase-seq
ChIP-seq
RRBS
tissue
islet of Langerhans
1
14
4
2
retina
15
3
3
pigmented layer of retina
12
2
small intestine
1
primary cell
retinal pigment epithelial cell
1
1
1
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