Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 28ATAC-seq
  • 18total RNA-seq
  • 4pCHi-C
  • 3ChIP-seq
  • 1DNase-seq
Assay category
  • 29DNA accessibility
  • 18Transcription
  • 3DNA binding
Target of assay
  • 2histone
  • 2histone modification
  • 2narrow histone mark
  • 1control
Date released
  • 31February, 2023
  • 21October, 2019
  • 2June, 2019
Available data
  • 28bed narrowPeak
  • 4tsv
  • 2bam
  • 1bed bed3+
  • 1bed broadPeak
  • 1bigBed broadPeak
  • 1bigBed narrowPeak
  • 1bigWig
Organism
  • 54Homo sapiens
Biosample type
  • 53tissue
  • 1primary cell
Organ
  • 745pancreas
  • 616connective tissue
  • 474adipose tissue
  • 365liver
  • 355epithelium
  • 352heart
  • 296kidney
  • 190brain
  • 187vasculature
  • 186blood vessel
  • 150bone element
  • 130artery
  • 114limb
  • 74musculature of body
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 19lung
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 54AMP
Genome assembly (visualization)
  • 28hg19
  • 1GRCh38
Lab
  • 54AMP-T2D consortium
BIOSAMPLE
ASSAY

54 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
DNase-seq
tissue
islet of Langerhans11442
retina1521
pigmented layer of retina122
primary cell
retinal pigment epithelial cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego